- r -
- r
: floatcomplex
, PatchElem
, LCPOAtom
, ComputePatchPair
, doublecomplex
, ComputeNonbondedCUDA::patch_record
, TuplePatchElem
, ComputeNonbondedMIC::patch_record
, ComputePatch
- r2_delta
: ComputeNonbondedUtil
- r2_delta_1
: ComputeNonbondedUtil
- r2_delta_exp
: ComputeNonbondedUtil
- r2_table
: ComputeNonbondedUtil
- r2list
: ComputeNonbondedWorkArrays
- r_cut2
: GBISParam< 2 >
- r_cut_2
: GBISParam< 2 >
- r_cut_4
: GBISParam< 2 >
- r_ohc
: Molecule
- r_om
: Molecule
- r_ub
: angle_params
, AngleValue
, CudaAngleValue
- Radii
: AmberParm7Reader::Ambertoppar
- RadiusSet
: AmberParm7Reader::Ambertoppar
- rand
: Node
- random
: colvarproxy_namd
, nonbonded
, Controller
, Sequencer
- randomSeed
: SimParameters
- range
: ParseOptions::DataElement
- rankInPhysOfNode
: pe_sortop_bit_reversed
- rattleList
: HomePatch
- rattleListValid
: HomePatch
- rattleParam
: HomePatch
- readExclusions
: SimParameters
- Real
: AmberParm7Reader::FortranData
- real_node
: NodePmeInfo
- reassignFreq
: SimParameters
- reassignHold
: SimParameters
- reassignIncr
: SimParameters
- reassignTemp
: SimParameters
- recent_alchWork
: Controller
- recent_dEdl_bond_1
: Controller
- recent_dEdl_bond_2
: Controller
- recent_dEdl_elec_1
: Controller
- recent_dEdl_elec_2
: Controller
- recent_dEdl_lj_1
: Controller
- recent_dEdl_lj_2
: Controller
- recent_TiNo
: Controller
- recipEvirPe
: PmeXPencil
- recipMass
: FullAtom
- recipvec1
: NL_Msm_t
- recipvec1_f
: NL_Msm_t
- recipvec2
: NL_Msm_t
- recipvec2_f
: NL_Msm_t
- recipvec3
: NL_Msm_t
- recipvec3_f
: NL_Msm_t
- reconfig
: ComputeGlobalResultsMsg
- recv_ack_idx
: DataExchanger
- recv_bcast_idx
: DataExchanger
- recv_data_idx
: DataExchanger
- recv_eval_command_idx
: DataExchanger
- recv_eval_result_idx
: DataExchanger
- recv_red_idx
: DataExchanger
- recvGridCutoff
: msm::BlockDiagram
- recvred
: DataExchanger
- reduction
: colvarproxy_namd
, ComputeCylindricalBC
, ComputeEField
, ComputeGridForce
, ComputeHomeTuples< T, S, P >
, ComputeLCPO
, ComputeNonbondedCUDA
, ComputeNonbondedMIC
, ComputeNonbondedPair
, ComputeNonbondedSelf
, nonbonded
, ComputeRestraints
, ComputeSphericalBC
, ComputeStir
, Controller
, Sequencer
- reductionData
: ComputeNonbondedPair
, ComputeNonbondedSelf
- reductionMgr
: BOCgroup
- reductionSetID
: ReductionRegisterMsg
, ReductionSubmitMsg
, ReductionSet
- refCount
: ComputeNonbondedCUDA::patch_record
, ComputeNonbondedMIC::patch_record
, UniqueSetRaw< Elem >
- reg_all_objs
: LdbCoordinator
- remoteActivePatches
: ComputeNonbondedMIC
, ComputeNonbondedCUDA
- remoteComputeRecords
: ComputeNonbondedCUDA
, ComputeNonbondedMIC
- remoteHostedPatches
: ComputeNonbondedCUDA
, ComputeNonbondedMIC
- rep
: ResizeArray< T >
- replace
: QMForce
, ExtForce
- replica
: CheckpointMsg
, CheckpointAtomsReqMsg
, CheckpointAtomsMsg
- replicaUniformPatchGrids
: SimParameters
- report_timings
: NL_Msm_t
- Req
: parm
, AmberParm7Reader::Ambertoppar
- reqAtoms
: GlobalMaster
- reqAtomsChanged
: GlobalMaster
- reqGridObjs
: GlobalMaster
- reqGridObjsChanged
: GlobalMaster
- reqGroups
: GlobalMaster
- reqGroupsChanged
: GlobalMaster
- requireRegistered
: ReductionSet
- rescaleFreq
: SimParameters
- rescaleTemp
: SimParameters
- rescaleVelocities_numTemps
: Controller
, Sequencer
- rescaleVelocities_sumTemps
: Controller
- resendCoordinates
: ComputeGlobalResultsMsg
- resid
: refSelStr
- resID
: OutputAtomRecord::integerVals
- resid
: seg_resid
- resID
: qmSolvData
, BasicAtomInfo
- resIndx
: LSSDataStr
- resname
: atom_name_info
- resnameIdx
: AtomNameIdx
- resNameIdx
: OutputAtomRecord::shortVals
, BasicAtomInfo
- ResNames
: AmberParm7Reader::Ambertoppar
, parm
- resStencil
: MsmBlockKernel< Vtype, Mtype >
- restart
: eABF
- restartFilename
: SimParameters
- restartFrequency
: SimParameters
- restartSave
: SimParameters
- restartSaveDcd
: SimParameters
- restrictions
: go_val
- results
: CudaComputeNonbonded::PatchRecord
, Patch
- reversePriorityRankInPe
: ComputeNonbondedCUDA::patch_record
, CudaComputeNonbonded::PatchRecord
- reverted
: CollectLoadsMsg
- rho
: ComputeGBISAtom
- rho0
: ComputeGBISAtom
- rho_0
: GBISParamStruct
- rhos
: ComputeGBISAtom
- right
: indexed_table_pair
, angle_params
, bond_params
, vdw_params
, indexed_nbthole_pair
, indexed_vdw_pair
- rigidBondLength
: FullAtom
, OutputAtomRecord::floatVals
- rigidBonds
: SimParameters
- rigidDie
: SimParameters
- rigidIter
: SimParameters
- rigidTol
: SimParameters
- Rk
: AmberParm7Reader::Ambertoppar
, parm
- rma
: RattleParam
- rmb
: RattleParam
- rotConsAxis
: SimParameters
- rotConsPivot
: SimParameters
- rotConstraintsOn
: SimParameters
- rotConsVel
: SimParameters
- rotDragAxisFile
: SimParameters
- rotDragFile
: SimParameters
- rotDragGlobVel
: SimParameters
- rotDragOn
: SimParameters
- rotDragPivotFile
: SimParameters
- rotDragVelFile
: SimParameters
- rowsize
: ComputeNonbondedUtil
, Parameters
- ru
: ComputeMsmMgr
- rv
: ComputeMsmMgr
- rw
: ComputeMsmMgr