Paper Citing NAMD - Abstract
Yim, Keun Soo
Characterization of Impact of Transient Faults and Detection of Data Corruption Errors in Large-Scale N-Body Programs Using Graphics Processing Units
2014 IEEE 28TH INTERNATIONAL PARALLEL AND DISTRIBUTED PROCESSING SYMPOSIUM, DOI:10.1109/IPDPS.2014.55, 2014
In N-body programs, trajectories of simulated particles have chaotic patterns if errors are in the initial conditions or occur during some computation steps. It was believed that the global properties (e.g., total energy) of simulated particles are unlikely to be affected by a small number of such errors. In this paper, we present a quantitative analysis of the impact of transient faults in GPU devices on a global property of simulated particles. We experimentally show that a single-bit error in non-control data can change the final total energy of a large-scale N-body program with similar to 2.1% probability. We also find that the corrupted total energy values have certain biases (e.g., the values are not a normal distribution), which can be used to reduce the expected number of re-executions. In this paper, we also present a data error detection technique for N-body programs by utilizing two types of properties that hold in simulated physical models. The presented technique and an existing redundancy-based technique together cover many data errors (e.g., >97.5%) with a small performance overhead (e.g., 2.3%).
