Binkowski, T. Andrew; Jiang, Wei; Roux, Benoit; Anderson, Wayne F.; Joachimiak, Andrzej
Virtual High-Throughput Ligand Screening
STRUCTURAL GENOMICS AND DRUG DISCOVERY: METHODS AND PROTOCOLS, 1140:251-261, 2014

In Structural Genomics projects, virtual high-throughput ligand screening can be utilized to provide important functional details for newly determined protein structures. Using a variety of publicly available software tools, it is possible to computationally model, predict, and evaluate how different ligands interact with a given protein. At the Center for Structural Genomics of Infectious Diseases (CSGID) a series of protein analysis, docking and molecular dynamics software is scripted into a single hierarchical pipeline allowing for an exhaustive investigation of protein-ligand interactions. The ability to conduct accurate computational predictions of protein-ligand binding is a vital component in improving both the efficiency and economics of drug discovery. Computational simulations can minimize experimental efforts, the slowest and most cost prohibitive aspect of identifying new therapeutics.

DOI:10.1007/978-1-4939-0354-2_19

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