Paper Citing NAMD - Abstract
Sassaki, Guilherme L.; Elli, Stefano; Rudd, Timothy R.; Macchi, Eleonora; Yates, Edwin A.; Naggi, Annamaria; Shriver, Zachary; Raman, Rahul; Sasisekharan, R.; Torri, Giangiacomo; Guerrini, Marco
Human (alpha 2 -> 6) and Avian (alpha 2 -> 3) Sialylated Receptors of Influenza A Virus Show Distinct Conformations and Dynamics in Solution
BIOCHEMISTRY, 52:7217-7230, OCT 15 2013
Differential interactions between influenza A virus protein hemagglutinin (HA) and alpha 2 -> 3 (avian) or alpha 2 -> 6 (human) sialylated glycan receptors play an important role in governing host specificity and adaptation of the virus. Previous analysis of HA-glycan interactions with trisaccharides showed that, in addition to the terminal sialic acid linkage, the conformation and topology of the glycans, while they are bound to HA, are key factors in regulating these interactions. Here, the solution conformation and dynamics of two representative avian and human glycan pentasaccharide receptors [ISTa, Neu5Ac-alpha(2 -> 3)-Gal-beta(1 -> 3)-GlcNAc-beta(1 -> 3)-Gal-beta(1 -> 4)-Glc; LSTc, (Neu5Ac-alpha(2 -> 6)-Gal-beta(1 -> 4)GlcNAc-0(1 -> 3)-Gal-beta(1 -> 4)-Glc] have been explored using nuclear magnetic resonance and molecular dynamics simulation. Analyses demonstrate that, in solution, human and avian receptors sample distinct conformations, topologies, and dynamics. These unique features of avian and human receptors in solution could represent distinct molecular characteristics for recognition by HA, thereby providing the HA-glycan interaction specificity in influenza.
