Paper Citing NAMD - Abstract
Thibault, Julien C.; Facelli, Julio C.; Cheatham, Thomas E., I.I.I.
iBIOMES: Managing and Sharing Biomolecular Simulation Data in a Distributed Environment
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 53:726-736, MAR 2013
Biomolecular simulations, which were once batch queue or compute limited, have now become data analysis and management limited. In this paper we introduce a new management system for large biomolecular simulation and computational chemistry data sets. The system can be easily deployed on distributed servers to create a mini-grid at the researcher's site. The system not only offers a simple data deposition mechanism but also a way to register data into the system without moving the data from their original location. Any registered data set can be searched and downloaded using a set of defined metadata for molecular dynamics and quantum mechanics and visualized through a dynamic Web interface.
