Paper Citing NAMD - Abstract
Karachevtsev, Maksym V.; Gladchenko, Galina O.; Plokhotnichenko, Alexander M.; Leontiev, Victor S.; Karachevtsev, Victor A.
Adsorption of Biopolymers on SWCNT: Ordered Poly(rC) and Disordered Poly(rI)
JOURNAL OF PHYSICAL CHEMISTRY B, 117:2636-2644, MAR 7 2013
Polymer adsorption onto single-walled carbon nanotubes (SWCNTs) depends on its rigidity/flexibility. The adsorption properties of two related homopolynucleotides poly(rI) and poly(rC) but of different rigidities were compared, employing absorption spectroscopy and molecular dynamics simulation. It was shown that adsorption of the poor base stacked poly(rI) onto the nanotube is less effective than that of the strong base stacked poly(rC), the chain of which is of higher rigidity. Analysis of UV absorption spectra of polymer:nanotube suspension at heating until 90 degrees C, which leads to partial nanotube aggregation because of the weakly bound polymer sliding from the tube surface, revealed that the percent of precipitated nanotubes in suspension with poly(rI) is larger than that in suspension with poly(rC) (16% vs 7%). This fact indicates the higher stability of SWCNT:poly(rC) hybrid in comparison with SWCNT:poly(rI). Less effective adsorption of poly(rI) is confirmed with a weaker hypochromic effect of nanotubes covered with poly(rI) than with poly(rC), which originates from pi-pi stacking of nitrogen bases with the nanotube surface. Spontaneous adsorption of oligomers on the nanotube simulated by the molecular dynamics showed that oligomer r(I)(25) has a weaker energy of binding to the carbon nanotube surface than r(C)(25). The oligomer with ordered bases has a tendency to form the stretched conformation along the nanotube, which provides a higher binding energy, while more flexible r(I)(25) forms the stable loop spaced away from the nanotube surface, the stability of which is strengthened with H-bonding between bases.
