Paper Citing NAMD - Abstract
Abroshan, Hadi; Akbarzadeh, Hamed; Taherkhani, Farid; Parsafar, Gholamabbas
Effect of water-methanol content on the structure of Nafion in the sandwich model and solvent dynamics in nano-channels: a molecular dynamics study
MOLECULAR PHYSICS, 109:709-724, 2011
Continuing an ongoing study, molecular dynamics (MD) simulations were performed to investigate the effects of methanol concentration on Nafion morphology, such as the size of solvent cluster, solvent location, and polymer structure via the sandwich model. Our survey shows that high methanol concentrations resulted in increment of solvent cluster size in Nafion membrane. The sulfonic acid clusters also befall much in order as subsequent layers of such ionic clusters are formed. The number of neighbouring hydronium ions around a sulfur atom is independent of methanol concentration, but the first shell of hydronium and water around sulfonic acid clusters is broader. Although methanol would prefer to interact with water molecules rather than sulfonic acid groups, gathering of methanol molecules via hydrophobic self-aggregation is preferred. Methanol is located closer to the hydrophobic part of the polymer than water, while water is located closer to the hydrophilic part of the polymer. It was found that methanol distributes specifically more than water in nano-channels. Investigation of solvent dynamics in nano-channels shows that diffusion coefficients (D) of water, methanol, and hydronium decrease with increasing methanol concentration and they may be ordered as follows: D-Water > D-Methanol > D-Hydronium (D-Water approximate to 1.6-2.0D(Methanol) and D-Methanol approximate to 2.1-3.0D(Hydronium)).
