Paper Citing NAMD - Abstract
Roth, M. W.; Kaspar, M.; Wexler, Carlos; Firlej, L.; Kuchta, B.
Molecular dynamics simulations of submonolayer hexane and pentane films on graphite
MOLECULAR SIMULATION, 36:326-333, 2010
We present results of molecular dynamics computer simulations of hexane (C6H14 or C6) and pentane (C5H12 or C5) adlayers physisorbed onto a graphite substrate, for various submonolayer coverages. The hexane and pentane molecules incorporate explicit hydrogens and the graphite is modelled as a six-layer all-atom structure. Even though C6 and C5 have different structures at monolayer completion, both systems generally behave similarly in the submonolayer regime and results are in reasonable agreement with experiment for both systems. Specifically, there are four distinct topological regimes involving empty space: at densities closest to full coverage, there are large domains with individual vacancies, then with decreasing density, large vacancy patches appear first, followed by the formation of connected networks of smaller domains with multiple orientations that ultimately separate into individual patches. The energetics and melting behaviour of all systems are readily understood within the framework of the topology presented at various densities.
