Paper Citing NAMD - Abstract
Roumen, Luc; Sanders, Marijn P. A.; Pieterse, Koen; Hilbers, Peter A. J.; Plate, Ralf; Custers, Erica; de Gooyer, Marcel; Smits, Jos F. M.; Beugels, Ilona; Emmen, Judith; Ottenheijm, Harry C. J.; Leysen, Dirk; Hermans, J. J. R.
Construction of 3D models of the CYP11B family as a tool to predict ligand binding characteristics
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 21:455-471, AUG 2007
Aldosterone is synthesised by aldosterone synthase (CYP11B2). CYP11B2 has a highly homologous isoform, steroid 11 beta-hydroxylase (CYP11B1), which is responsible for the biosynthesis of aldosterone precursors and glucocorticoids. To investigate aldosterone biosynthesis and facilitate the search for selective CYP11B2 inhibitors, we constructed three-dimensional models for CYP11B1 and CYP11B2 for both human and rat. The models were constructed based on the crystal structure of Pseudomonas Putida CYP101 and Oryctolagus Cuniculus CYP2C5. Small steric active site differences between the isoforms were found to be the most important determinants for the regioselective steroid synthesis. A possible explanation for these steric differences for the selective synthesis of aldosterone by CYP11B2 is presented. The activities of the known CYP11B inhibitors metyrapone, R-etomidate, R-fadrazole and S-fadrazole were determined using assays of V79MZ cells that express human CYP11B1 and CYP11B2, respectively. By investigating the inhibitors in the human CYP11B models using molecular docking and molecular dynamics simulations we were able to predict a similar trend in potency for the inhibitors as found in the in vitro assays. Importantly, based on the docking and dynamics simulations it is possible to understand the enantioselectivity of the human enzymes for the inhibitor fadrazole, the R-enantiomer being selective for CYP11B2 and the S-enantiomer being selective for CYP11B1.
