Paper Citing NAMD - Abstract
Krammer, A.; Craig, D.; Thomas, W.E.; Schulten, K.; Vogel, V.
A structural model for force regulated integrin binding to fibronectin's RGD-synergy site
MATRIX BIOLOGY, 21:139-147, MAR 2002
The synergy site on fibronectin's FN-III9 module, located approximately 32 Angstrom away from the RGD-loop on FN-III10, greatly enhances integrin alpha(5)beta(1) mediated cell binding. Since fibronectin is exposed to mechanical forces acting on the extracellular matrix in vivo, we used steered molecular dynamics to study how mechanical stretching of FN-III9-10 affects the relative distance between these two synergistic sites. Our simulations predict the existence of an intermediate state prior to unfolding. In this state. the synergy-RGD distance is increased from 32 Angstrom to approximately 55 Angstrom, while the conformations of both sites remain unperturbed. This distance is too large for both sites to co-bind the same receptor, as indicated by experiments that confirm that increasing the length of the linker chain between FN-III9 and FN-III10 reduces alpha(5)beta(1) binding. Our simulations thus suggest that increased alpha(5)beta(1)-binding attributed to the synergy site, along with the associated downstream cell-signaling events, can be turned off mechanically by stretching FN-III9-10 into this intermediate state. The potential physiological implications are discussed. (C) 2002 Elsevier Science B.V. and International Society of Matrix Biology. All rights reserved.
DOI:10.1016/S0945-053X(01)00197-4
