Research Projects - Other
The nature of modern science is that it is ever-changing, energetically crossing boundaries heretofore defined by traditional areas of inquiry. Research at the Theoretical and Computational Biophysics group reflects this dynamic, with studies employing theoretical perspectives and methodological approaches or addressing topics that don't fall easily into one of the above categories. Included in this broad category are studies of a four-way DNA junction, the nuclear pore complex, gas transport in hydrogenase that may provide a source of renewable fuel, and other topics.
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Papers
Molecular dynamics simulations of the complete satellite tobacco mosaic virus. Peter L. Freddolino, Anton S. Arkhipov, Steven B. Larson, Alexander McPherson, and Klaus Schulten. Structure, 14:437-449, 2006.
Finding gas diffusion pathways in proteins: Application to O2 and H2 transport in CpI [FeFe]-hydrogenase and the role of packing defects. Jordi Cohen, Kwiseon Kim, Paul King, Michael Seibert, and Klaus Schulten. Structure, 13:1321-1329, 2005.
Binding dynamics of isolated nucleoporin repeat regions to importin-b. Timothy A. Isgro and Klaus Schulten. Structure, 13:1869-1879, 2005.
Conformational model of the Holliday junction transition deduced from molecular dynamics simulations. Jin Yu, Taekjip Ha, and Klaus Schulten. Nucleic Acids Research, 32:6683-6695, 2004.
Genetically engineered gold-binding polypeptides: Structure prediction and molecular dynamics. Rosemary Braun, Mehmet Sarikaya, and Klaus Schulten. Journal of Biomaterials Science, 13:747-758, 2002.
Research Projects
- Oil and Water Split DNA
- Microscopy and Computing Sharpen the Focus
- Spelunking Inside Myoglobin
- Graphics Processors Speed Up Simulations
- Passport for the Cell's Nucleus
- Bringing Oxygen into an Enzyme
- Animal Magnetic Sense Protein Shared by Plant
- The Ins and Outs of the Nucleus
- Viruses Up Close
- LOV in Motion
- Molecular Dynamics of STMV
- Gateway to the Nucleus
- Conformational Change of Holliday Junction
- The Nuclear Pore Complex
- Gas Transport Inside Hydrogenase Cpl
- Estrogen Receptor Interacting with DNA
- Gold Binding Proteins
- Imaging gas migration pathways inside myoglobin
