|
| 529. Squeezing protein shells: How continuum elastic models, molecular
dynamics simulations and experiments coalesce at the nanoscale.
Wouter H. Roos, Melissa M. Gibbons, Anton Arkhipov, Charlotte Uetrecht, Norman
Watts, Paul Wingfield, Alasdair C. Steven, Albert J.R.Heck, Klaus Schulten,
William S. Klug, and Gijs J.L. Wuite.
Biophysical Journal, 99:1175-1181, 2010.
(PMC: 2920642) |
| 517. Multi-scale simulations of membrane sculpting by N-BAR domains.
Ying Yin, Anton Arkhipov, and Klaus Schulten.
In Philip Biggin and Mark Sansom, editors, Molecular Simulations
and Biomembranes: From Biophysics to Function, chapter 6, pp. 146-176.
Royal Society of Chemistry, 2010.
|
| 505. Membrane-bending mechanism of amphiphysin N-BAR domains.
Anton Arkhipov, Ying Yin, and Klaus Schulten.
Biophysical Journal, 97:2727-2735, 2009.
(PMC: 2776244) |
| 503. Elucidating the mechanism behind irreversible deformation of viral
capsids.
Anton Arkhipov, Wouter H. Roos, Gijs J. L. Wuite, and Klaus Schulten.
Biophysical Journal, 97:2061-2069, 2009.
(PMC: 2756377) |
| 496. Simulations of membrane tubulation by lattices of amphiphysin N-BAR
domains.
Ying Yin, Anton Arkhipov, and Klaus Schulten.
Structure, 17:882-892, 2009.
(PMC: 2743466) |
| 493. Limits for reduction of effective focal volume in multiple-beam light
microscopy.
Anton Arkhipov and Klaus Schulten.
Optics Express, 17:2861-2870, 2009.
(PMC: 3160275) |
| 482. Using VMD - an introductory tutorial.
Jen Hsin, Anton Arkhipov, Ying Yin, John E. Stone, and Klaus Schulten.
Current Protocols - Bioinformatics, 5:Unit 5.7, 2008.
(48 pages).
(PMC: 2972669) |
| 478. Four-scale description of membrane sculpting by BAR domains.
Anton Arkhipov, Ying Yin, and Klaus Schulten.
Biophysical Journal, 95:2806-2821, 2008.
(PMC: 2527247) |
| 462. Molecular modeling of the structural properties and formation of
high-density lipoprotein particles.
Amy Y. Shih, Peter L. Freddolino, Anton Arkhipov, Stephen G. Sligar, and Klaus
Schulten.
In Scott Feller, editor, Current Topics in Membranes:
Computational Modeling of Membrane Bilayers, chapter 11, pp. 313-342.
Elsevier, 2008.
|
| 461. Application of residue-based and shape-based coarse graining to
biomolecular simulations.
Peter L. Freddolino, Anton Arkhipov, Amy Y. Shih, Ying Yin, Zhongzhou Chen, and
Klaus Schulten.
In Gregory A. Voth, editor, Coarse-Graining of Condensed Phase
and Biomolecular Systems, chapter 20, pp. 299-315. Chapman and Hall/CRC
Press, Taylor and Francis Group, 2008.
|
| 452. Continuous fluorescence microphotolysis and correlation spectroscopy
using 4Pi microscopy.
Anton Arkhipov, Jana Hüve, Martin Kahms, Reiner Peters, and Klaus Schulten.
Biophysical Journal, 93:4006-4017, 2007.
(PMC: 2084225) |
| 447. Assembly of lipids and proteins into lipoprotein particles.
Amy Y. Shih, Anton Arkhipov, Peter L. Freddolino, Stephen G. Sligar, and Klaus
Schulten.
Journal of Physical Chemistry B, 111:11095-11104, 2007.
|
| 438. Assembly of lipoprotein particles revealed by coarse-grained
molecular dynamics simulations.
Amy Y. Shih, Peter L. Freddolino, Anton Arkhipov, and Klaus Schulten.
Journal of Structural Biology, 157:579-592, 2007.
|
| 429. Stability and dynamics of virus capsids described by coarse-grained
modeling.
Anton Arkhipov, Peter L. Freddolino, and Klaus Schulten.
Structure, 14:1767-1777, 2006.
|
| 417. Coarse-grained molecular dynamics simulations of a rotating bacterial
flagellum.
Anton Arkhipov, Peter L. Freddolino, Katsumi Imada, Keiichi Namba, and Klaus
Schulten.
Biophysical Journal, 91:4589-4597, 2006.
(PMC: 1779929) |
| 415. Imaging the migration pathways for O2, CO, NO, and Xe
inside myoglobin.
Jordi Cohen, Anton Arkhipov, Rosemary Braun, and Klaus Schulten.
Biophysical Journal, 91:1844-1857, 2006.
(PMC: 1544290) |
| 408. The role of molecular modeling in bionanotechnology.
Deyu Lu, Aleksei Aksimentiev, Amy Y. Shih, Eduardo Cruz-Chu, Peter L.
Freddolino, Anton Arkhipov, and Klaus Schulten.
Physical Biology, 3:S40-S53, 2006.
(PMC: 2430730) |
| 406. Molecular dynamics simulations of the complete satellite tobacco
mosaic virus.
Peter L. Freddolino, Anton S. Arkhipov, Steven B. Larson, Alexander McPherson,
and Klaus Schulten.
Structure, 14:437-449, 2006.
|
| 405. Coarse grained protein-lipid model with application to lipoprotein
particles.
Amy Y. Shih, Anton Arkhipov, Peter L. Freddolino, and Klaus Schulten.
Journal of Physical Chemistry B, 110:3674-3684, 2006.
(PMC: 2535944) |
