Contact Information NAMD Developer Home Department: Beckman Institute Telephone: (217) 778-8363 Email: ebohm@illinois.edu Education: Bachelor's of Science Computer Science State University of New York at Buffalo Research Interests: High Performance Computing Charm++ Low Latency Networks Molecular Dynamics GPU Computing

Publications:

• OpenAtom: Scalable Ab-Initio Molecular Dynamics with Diverse Capability Nikhil Jain , Eric Bohm , Eric Mikida , Subhasish Mandal , Minjung Kim , Prateek Jindal , Qi Li , Sohrab Ismail-Beigi , Glenn Martyna , Laxmikant Kale, ISC 2016, 2016
• Mapping to Irregular Torus Topologies and Other Techniques for Petascale Biomolecular Simulation James Phillips , Yanhua Sun , Nikhil Jain , Eric Bohm , Laxmikant Kale, ISC 2014, 2014
• Overcoming the Scalability Challenges of Epidemic Simulations on Blue Waters , Jae-Seung Yeom , Abhinav Bhatele , Keith Bisset , Eric Bohm , Abhishek Gupta , Laxmikant Kale , Madhav Marathe , Dimitrios Nikolopoulos , Martin Schulz , Lukasz Wesolowski, IPDPS 2014, 2014
• Parallel Science and Engineering Applications: The Charm++ Approach: Chapter 4: Scalable Molecular Dynamics with NAMD James Phillips , Klaus Schulten , Abhinav Bhatele , Chao Mei , Yanhua Sun , Eric Bohm , Laxmikant Kale, 2013
• Parallel Science and Engineering Applications: The Charm++ Approach: Chapter 5: OpenAtom: Ab-initio Molecular Dynamics for Petascale Platforms Glenn Martyna , Eric Bohm , Ramprasad Venkataraman , Laxmikant Kale , Abhinav Bhatele, 2013
• Parallel Science and Engineering Applications: The Charm++ Approach: Chapter 10: Contagion Diffusion with EpiSimdemics Keith Bisset , Ashwin Aji , Tariq Kamal , Jae-Seung Yeom , Madhav Marathe , Eric Bohm , Abhishek Gupta, 2013
• Optimizing Fine-grained Communication in a Biomolecular Simulation Application on Cray XK6 , Yanhua Sun , Gengbin Zheng , Chao Mei , Eric Bohm , James Phillips , Terry Jones , Laxmikant Kale, SC 2012
• Simulation-based Performance Analysis and Tuning for a Two-level Directly Connected System Ehsan Totoni , Abhinav Bhatele , Eric Bohm , Nikhil Jain , Celso Mendes , Ryan Mokos , Gengbin Zheng , Laxmikant Kale, ICPADS 2011
• Enabling and Scaling Biomolecular Simulations of 100~Million Atoms on Petascale Machines with a Multicore-Optimized Message-Driven Runtime Chao Mei , Yanhua Sun , Gengbin Zheng , Eric Bohm , Laxmikant Kale , James Phillips , Chris Harrison, SC 2011
• NAnoscale Molecular Dynamics (NAMD) Laxmikant Kale , Abhinav Bhatele , Eric Bohm , James Phillips, Encyclopedia of Parallel Computing 2011
• Simulating Large Scale Parallel Applications using Statistical Models for Sequential Execution Blocks Gengbin Zheng , Gagan Gupta , Eric Bohm , Isaac Dooley , Laxmikant Kale, ICPADS 2010
• Optimizing Communication for Charm++ Applications by Reducing Network Contention Abhinav Bhatele , Eric Bohm , Laxmikant Kale, Concurrency and Computation: Practice and Experience 2010
• Understanding Application Performance via Micro-Benchmarks on Three Large Supercomputers: Intrepid, Ranger and Jaguar Abhinav Bhatele , Lukasz Wesolowski , Eric Bohm , Edgar Solomonik , Laxmikant Kale, IJHPCA 2010
• CkDirect: Unsynchronized One-Sided Communication in a Message-Driven Paradigm Eric Bohm , Sayantan Chakravorty , Pritish Jetley , Abhinav Bhatele , Laxmikant Kale, P2S2 2009
• A Case Study of Communication Optimizations on 3D Mesh Interconnects Abhinav Bhatele , Eric Bohm , Laxmikant Kale, Euro-Par 2009
• Programming Petascale Applications with Charm++ and AMPI Laxmikant Kale , Eric Bohm , Celso Mendes , Terry Wilmarth , Gengbin Zheng, Petascale Computing: Algorithms and Applications 2007
• Fine Grained Parallelization of the Car-Parrinello ab initio MD Method on Blue Gene/L Eric Bohm , Abhinav Bhatele , Laxmikant Kale , Mark Tuckerman , Sameer Kumar , John Gunnels , Glenn Martyna, IBM Journal of Research and Development 2007
• Scalable Molecular Dynamics with NAMD on Blue Gene/L Sameer Kumar , Chao Huang , Gengbin Zheng , Eric Bohm , Abhinav Bhatele , James Phillips , Hao Yu , Laxmikant Kale, IBM Journal of Research and Development 2007
• Charm++, Offload API, and the Cell Processor David Kunzman , Gengbin Zheng , Eric Bohm , Laxmikant Kale, PMUP 2006
• Scalable, Fine Grain, Parallelization of the Car-Parrinello ab initio Molecular Dynamics Method Sameer Kumar , Yan Shi , Eric Bohm , Laxmikant Kale, PPL Technical Report 2005
• Scaling an Optimistic Parallel Simulation of Large-scale Interconnection Networks Nilesh Choudhury , Yogesh Mehta , Terry Wilmarth , Eric Bohm , Laxmikant Kale, WSC 2005
• Performance Prediction using Simulation of Large-scale Interconnection Networks in POSE Terry Wilmarth , Gengbin Zheng , Eric Bohm , Yogesh Mehta , Nilesh Choudhury , Praveen Jagadishprasad , Laxmikant Kale, PADS 2005