- b -
- b()
: Lattice
- b_p()
: Lattice
- b_r()
: Lattice
- backend_angstrom_value()
: colvarproxy_namd
- backup_file()
: colvarproxy_namd
- backward()
: CudaFFTCompute
, FFTCompute
- backward_fft()
: PmeZPencil
, PmeYPencil
, PmeXPencil
- backward_subset_fft()
: PmeYPencil
- backwardDone()
: PmePencilXYZ
- bad()
: ofstream_namd
- barrier()
: BackEnd
, LdbCoordinator
- base_init()
: PmePencil< T >
- basenode()
: PatchMap
- basePatchIDList()
: PatchMap
- bcastHydroBasedCounter()
: ParallelIOMgr
- bcastMolInfo()
: ParallelIOMgr
- begin()
: Array< Elem, Size >
, ResizeArray< T >
, ResizeArrayIter< Type >
, ResizeArrayPrimIter< T >
, UniqueSetIter< Type >
- berendsenPressure()
: Controller
, Sequencer
- binaryRefine()
: RefineTorusLB
- bind_constants()
: ComputeNonbondedMIC
- bind_exclusions()
: ComputeNonbondedMIC
- bind_force_table()
: ComputeNonbondedMIC
- bind_lj_table()
: ComputeNonbondedMIC
- bindExclusions()
: CudaComputeNonbondedKernel
- block()
: CollectionMaster::CollectVectorSequence
- blockFlatIndex()
: ComputeMsmMgr
- BlockIndex()
: msm::BlockIndex
- blockOfGridIndex()
: msm::Map
- blockOfGridIndexFold()
: msm::Map
- blockPositions()
: CollectionMaster
- BOCCheckIn()
: Node
- BOID()
: BOID
- boltzmann()
: colvarproxy_namd
- bondedForce()
: ComputeBondedCUDAKernel
- BondElem()
: BondElem
- BondValue()
: BondValue
- bornRadBoxClosed()
: Patch
- boxClosed()
: HomePatch
, Patch
, ProxyPatch
- brickDim()
: Rebalancer
- BroadcastClient()
: BroadcastClient
- BroadcastClientElem()
: BroadcastClientElem
- BroadcastMgr()
: BroadcastMgr
- BroadcastMsg()
: BroadcastMsg
- bsearch()
: SortableResizeArray< Type >
, SortedArray< Type >
- buffer()
: msm::GridFixed< T, N >
, msm::Array< T >
, msm::GridFixed< T, N >
, msm::Array< T >
- build_alch_unpert_bond_lists()
: Molecule
- build_constant_forces()
: Molecule
- build_constorque_params()
: Molecule
- build_constraint_params()
: Molecule
- build_exclusions()
: ComputeNonbondedMIC
, ComputeNonbondedCUDA
- build_exPressure_atoms()
: Molecule
- build_extra_bonds()
: Molecule
- build_fep_flags()
: Molecule
- build_fixed_atoms()
: Molecule
- build_force_table()
: ComputeNonbondedCUDA
- build_go_arrays()
: Molecule
- build_go_params()
: Molecule
- build_go_sigmas()
: Molecule
- build_go_sigmas2()
: Molecule
- build_gridforce_params()
: Molecule
- build_gro_pair()
: Molecule
- build_langevin_params()
: Molecule
- build_lj_table()
: ComputeNonbondedCUDA
- build_movdrag_params()
: Molecule
- build_rotdrag_params()
: Molecule
- build_ss_flags()
: Molecule
- build_stirred_atoms()
: Molecule
- buildMsg()
: CollectProxyVectorInstance
- buildNodeAwarePeOrdering()
: WorkDistrib
- buildProxySpanningTree()
: ProxyMgr
- buildProxySpanningTree2()
: ProxyMgr
- buildRattleList()
: HomePatch
- buildSpanningTree()
: HomePatch
- buildSpanningTree0()
: ProxyMgr
- buildSpanTree()
: ReductionMgr
- buildSubgridsFlat()
: GridforceFullMainGrid
- buildTileLists()
: CudaTileListKernel
- buildTuples()
: ExclusionSignature