Here is a list of all class members with links to the classes they belong to:
- n -
- n
: msm::BlockIndex
, SplitComputesMsg
, CudaDihedralValue
- N
: SimParameters
- n
: four_body_consts
- n_moves
: LocalLBInfoMsg
- n_sum
: GridforceFullBaseGrid
- Namd
: NamdState
- NamdCentLB()
: NamdCentLB
- NamdDummyLB()
: NamdDummyLB
- NamdHybridLB()
: NamdHybridLB
- NamdState()
: NamdState
- name
: ConfigList::ConfigListNode
, ParseOptions::DataElement
, PDBAtom
- Nat3
: parm
- Natcap
: parm
- natom
: PmeLaunchMsg
- Natom
: parm
, AmberParm7Reader::Ambertoppar
- Natyp
: parm
, AmberParm7Reader::Ambertoppar
- nbinslots
: NL_Msm_t
- nblock
: msm::BlockSend
, PmeTranspose
- nblock_wrap
: msm::BlockSend
- Nbona
: AmberParm7Reader::Ambertoppar
, parm
- nbond
: Results
- nbondFreq
: Controller
- nbondVirialIndex_XX
: ComputeBondedCUDAKernel
- nbondVirialIndex_XY
: ComputeBondedCUDAKernel
- nbondVirialIndex_XZ
: ComputeBondedCUDAKernel
- nbondVirialIndex_YX
: ComputeBondedCUDAKernel
- nbondVirialIndex_YY
: ComputeBondedCUDAKernel
- nbondVirialIndex_YZ
: ComputeBondedCUDAKernel
- nbondVirialIndex_ZX
: ComputeBondedCUDAKernel
- nbondVirialIndex_ZY
: ComputeBondedCUDAKernel
- nbondVirialIndex_ZZ
: ComputeBondedCUDAKernel
- Nbonh
: parm
, AmberParm7Reader::Ambertoppar
- Nbper
: AmberParm7Reader::Ambertoppar
- nbrhd
: NL_Msm_t
- nbrhdlen
: NL_Msm_t
- nbrhdmax
: NL_Msm_t
- nbthole_array
: Parameters
- nbthole_pair_tree
: Parameters
- nbx
: NL_Msm_t
- nby
: NL_Msm_t
- nbytes
: GridMsg
- nbz
: NL_Msm_t
- nChild
: Patch
- nComputesExpected
: LdbCoordinator
- nComputesReported
: LdbCoordinator
- Ncopy
: AmberParm7Reader::Ambertoppar
- Ndper
: AmberParm7Reader::Ambertoppar
- ndsplitting()
: ComputeMsmMgr
- nearest()
: Lattice
- needs_reply
: PmePencil< T >
- net_dE
: Controller
- net_dEdl_bond_1
: Controller
- net_dEdl_bond_2
: Controller
- net_dEdl_elec_1
: Controller
- net_dEdl_elec_2
: Controller
- net_dEdl_lj_1
: Controller
- net_dEdl_lj_2
: Controller
- new_grid()
: GridforceGrid
- newaid
: ComputeGlobalResultsMsg
- newCharge
: LSSSubsDat
- newCid()
: PatchMap
- newgdef
: ComputeGlobalResultsMsg
- newgridobjid
: ComputeGlobalResultsMsg
- newID
: LSSSubsDat
- newInputStream()
: Communicate
- newlist()
: LCPONeighborList
, Pairlists
- newMinimizeDirection()
: Sequencer
- newMinimizePosition()
: Sequencer
- newNode()
: ComputeMap
- newNodes
: ComputeMapChangeMsg
- newNumPartitions
: ComputeMap::ComputeData
, ComputeMapChangeMsg
, ComputeMap
- newOutputStream()
: Communicate
- newPid()
: ComputeMap
- newRefine()
: RefineTorusLB
- newsize()
: LCPONeighborList
, Pairlists
- newtonianVelocities()
: Sequencer
- newVdWType
: LSSSubsDat
- next
: FileStack
, StringList
, ConfigList::ConfigListNode
, heapIterator
, LdbMigrateMsg
, MGridforceParams
, ResidueLookupElem
, NL_Msm_t
, StreamMessage
, dihedral_params
, improper_params
, crossterm_params
, vdw_pair_params
, table_pair_params
, nbthole_pair_params
, PAL
, ReductionSetData
, listNode
, Iterator
, minHeap
, maxHeap
, IRSet
, Entry< Elem >
, EntryGlob< Elem >
- nextent
: msm::IndexRange
- nextent_i
: GridMsg
- nextent_j
: GridMsg
- nextent_k
: GridMsg
- nextlist()
: LCPONeighborList
, Pairlists
- nextSequenceNumber
: ReductionSet
- NFILE
: ReplicaDcdDataMsg
- Ngper
: AmberParm7Reader::Ambertoppar
- Nhparm
: parm
, AmberParm7Reader::Ambertoppar
- nhx
: ComputeMsmMgr
- nhy
: ComputeMsmMgr
- nhz
: ComputeMsmMgr
- ni()
: msm::IndexRange
- Nimphi
: AmberParm7Reader::Ambertoppar
- NimprTypes
: AmberParm7Reader::Ambertoppar
- nj()
: msm::IndexRange
- nk()
: msm::IndexRange
- nlevels
: MsmBlockProxyMsg
, MsmC1HermiteBlockProxyMsg
, ComputeMsmMgr
, NL_Msm_t
- nLocalComputes
: LdbCoordinator
- nLocalPatches
: LdbCoordinator
- nlower
: msm::IndexRange
- nlower_i
: GridMsg
- nlower_j
: GridMsg
- nlower_k
: GridMsg
- nMoveableComputes
: SplitComputesMsg
- Nmxrs
: parm
, AmberParm7Reader::Ambertoppar
- nn()
: msm::IndexRange
- Nnb
: parm
, AmberParm7Reader::Ambertoppar
- no_footnote
: PDBAtom
- noconstList
: HomePatch
- node
: BOCgroup
, ComputeDPMEDataMsg
, ComputeDPMEResultsMsg
, ComputeMap::ComputeData
, RegisterProxyMsg
, UnregisterProxyMsg
, ProxyResultMsg
, ProxyResultVarsizeMsg
, ProxySpanningTreeMsg
, nodesort
, ComputeMap
, PatchMap
- Node
: Controller
, NamdState
, Node
- node_process_grid()
: PmeZPencil
- node_process_trans()
: PmeYPencil
, PmeXPencil
- node_process_untrans()
: PmeZPencil
, PmeYPencil
- nodecount
: ProxyMgr
- nodeDone()
: LdbCoordinator
- nodeID
: proxyTreeNode
, MovePatch
- NodePmeMgr
: ComputePmeMgr
, NodePmeMgr
- nodePmeMgr
: BOCgroup
- NodeProxyMgr()
: NodeProxyMgr
- nodes
: ProxyCombinedResultRawMsg
, ProxyCombinedResultMsg
- nodeSize
: ProxyCombinedResultRawMsg
- nodesort()
: nodesort
- noGradient
: minpoint
- nomergegrids
: cuda_args_t
- nonbonded_select()
: SimParameters
- nonbondedForce()
: CudaComputeNonbondedKernel
- nonbondedFrequency
: SimParameters
- nonbondedGroupSize
: CompAtom
- nonbondedScaling
: SimParameters
- NONIC
: ComputeMsmMgr
- NONIC4
: ComputeMsmMgr
- noPatchesOnOne
: SimParameters
- noPatchesOnOutputPEs
: SimParameters
- noPatchesOnZero
: SimParameters
- normal
: angle_params
, AngleValue
, Results
, CudaAngleValue
- normalVirialIndex_XX
: ComputeBondedCUDAKernel
- normalVirialIndex_XY
: ComputeBondedCUDAKernel
- normalVirialIndex_XZ
: ComputeBondedCUDAKernel
- normalVirialIndex_YX
: ComputeBondedCUDAKernel
- normalVirialIndex_YY
: ComputeBondedCUDAKernel
- normalVirialIndex_YZ
: ComputeBondedCUDAKernel
- normalVirialIndex_ZX
: ComputeBondedCUDAKernel
- normalVirialIndex_ZY
: ComputeBondedCUDAKernel
- normalVirialIndex_ZZ
: ComputeBondedCUDAKernel
- nostreaming
: cuda_args_t
- NOT_PROCESSED
: CollectionMaster
- notfree()
: CollectionMaster::CollectVectorInstance
, CollectionMgr::CollectVectorInstance
, CollectProxyVectorInstance
- noWork()
: Compute
, ComputeLCPO
, ComputeNonbondedCUDA
, ComputeNonbondedMIC
, ComputeNonbondedPair
, ComputeNonbondedSelf
, ComputePme
, ComputePmeCUDA
, CudaComputeNonbonded
- Nparm
: parm
, AmberParm7Reader::Ambertoppar
- npatches
: nodesort
- nPatches
: LdbCoordinator
- nPatchesExpected
: LdbCoordinator
- nPatchesReported
: LdbCoordinator
- npe
: NodePmeInfo
- Nphb
: parm
, AmberParm7Reader::Ambertoppar
- Nphia
: parm
, AmberParm7Reader::Ambertoppar
- Nphih
: parm
, AmberParm7Reader::Ambertoppar
- NPRIV
: ReplicaDcdDataMsg
- Nptra
: parm
, AmberParm7Reader::Ambertoppar
- nradius
: NL_Msm_t
- nrange
: msm::BlockSend
, msm::PatchSend
, msm::PatchDiagram
, msm::BlockDiagram
- nrange_unwrap
: msm::PatchSend
- nrange_wrap
: msm::BlockSend
- nrangeCutoff
: msm::BlockDiagram
- nrangeProlongated
: msm::BlockDiagram
- nrangeRestricted
: msm::BlockDiagram
- nRegisteredObjs
: LdbCoordinator
- Nres
: parm
, AmberParm7Reader::Ambertoppar
- NSAVC
: ReplicaDcdDataMsg
- Nspm
: parm
, AmberParm7Reader::Ambertoppar
- Nspsol
: parm
, AmberParm7Reader::Ambertoppar
- nStatsMessagesExpected
: LdbCoordinator
- nStatsMessagesReceived
: LdbCoordinator
- Nstencil
: ComputeMsmMgr
- NSTEP
: ReplicaDcdDataMsg
- Ntheta
: parm
, AmberParm7Reader::Ambertoppar
- Ntheth
: AmberParm7Reader::Ambertoppar
, parm
- Nttyp
: parm
- Ntype2d
: parm
- Ntypes
: parm
, AmberParm7Reader::Ambertoppar
- nu
: InterpParams_t
- Nub
: AmberParm7Reader::Ambertoppar
- Nubtypes
: AmberParm7Reader::Ambertoppar
- num()
: ParseOptions
- num_alch_unpert_Angles
: Molecule
- num_alch_unpert_Bonds
: Molecule
- num_alch_unpert_Dihedrals
: Molecule
- NUM_APPROX
: ComputeMsmMgr
- NUM_APPROX_FORMS
: ComputeMsmMgr
- num_atom_records
: ComputeNonbondedMIC
- num_atoms()
: PDB
- num_clients
: MoaData
- num_clients_bh
: MoaData
- num_clients_qh
: MoaData
- num_clients_sh
: MoaData
- num_deg_freedom()
: Molecule
- num_fixed_atoms()
: Molecule
- num_fixed_groups()
: Molecule
- num_force_records
: ComputeNonbondedMIC
- num_group_deg_freedom()
: Molecule
- num_local_atom_records
: ComputeNonbondedMIC
- num_local_compute_records
: ComputeNonbondedMIC
- num_local_patch_records
: ComputeNonbondedMIC
- num_remote_atom_records
: ComputeNonbondedMIC
- num_remote_compute_records
: ComputeNonbondedMIC
- num_remote_patch_records
: ComputeNonbondedMIC
- num_replicas()
: colvarproxy_namd
- NUM_SPLIT
: ComputeMsmMgr
- numAcceptors
: Molecule
- numAcksOutstanding
: ParallelIOMgr
- numAllAtoms
: QMGrpCalcMsg
- numAllPntChrgs
: QMGrpCalcMsg
- Numang
: parm
, AmberParm7Reader::Ambertoppar
- NumAngleParams
: Parameters
- numAngles
: MolInfoMsg
, Molecule
- numAnisos
: Molecule
- numatoms
: NL_Msm_t
- numAtoms
: FmmSerialCoordMsg
, GBISCoordMsg
, ComputeHomePatch
, MsmSerialCoordMsg
, ComputeNonbondedCUDA::patch_record
, ComputeNonbondedMIC::patch_record
, nonbonded
, ComputePatch
, ComputePatchPair
, PmeAtomMsg
, PmeAtomPencilMsg
, PmeForcePencilMsg
, QMCoordMsg
, CudaComputeNonbonded::PatchRecord
, CudaPatchRecord
, ReplicaDcdDataMsg
, HomePatch::checkpoint_t
, MigrateAtomsCombinedMsg
, Molecule
, Patch
, CheckpointAtomsMsg
, ExchangeAtomsMsg
, PmeRealSpaceCompute
, QMPntChrgMsg
, patchInfo
, PmeForceMsg
, ExtCoordMsg
, ComputeLCPO
- numAtomsPair
: SimParameters
- numAtomsPair2
: SimParameters
- numAtomsSelf
: SimParameters
- numAtomsSelf2
: SimParameters
- numAvailable()
: Rebalancer
- numaway_a()
: PatchMap
- numaway_b()
: PatchMap
- numaway_c()
: PatchMap
- numbins
: NL_Msm_t
- Numbnd
: parm
, AmberParm7Reader::Ambertoppar
- NumBondParams
: Parameters
- numBonds
: Molecule
, MolInfoMsg
- numCalcAngles
: Molecule
, MolInfoMsg
- numCalcAnisos
: Molecule
- numCalcBonds
: Molecule
, MolInfoMsg
- numCalcCrossterms
: Molecule
, MolInfoMsg
- numCalcDihedrals
: Molecule
, MolInfoMsg
- numCalcExclusions
: MolInfoMsg
, Molecule
- numCalcFullExclusions
: Molecule
, MolInfoMsg
- numCalcImpropers
: MolInfoMsg
, Molecule
- numCalcLJPair
: Molecule
- numCalcLJPairs
: MolInfoMsg
- numCalcTholes
: Molecule
- numChildren
: DataExchanger
- numCids()
: PatchMap
- numComputes
: LdbCoordinator
, Rebalancer
, ComputeMap
- numConsForce
: Molecule
- numConsTorque
: Molecule
- numConstraints
: Molecule
- NumCosAngles
: Parameters
- NumCrosstermParams
: Parameters
- numCrossterms
: Molecule
, MolInfoMsg
- numDegFreedom
: Controller
- numDevices
: NumDevicesMsg
- numDevicesMax
: RecvDeviceMsg
- NumDevicesMsg()
: NumDevicesMsg
- NumDihedralParams
: Parameters
- numDihedrals
: Molecule
, MolInfoMsg
- numDonors
: Molecule
- numDrudeAtoms
: Molecule
- numElements()
: minHeap
, maxHeap
, IRSet
- numenerentries
: Parameters
- numExcluded
: TileListStat
- numExclusions
: MolInfoMsg
, Molecule
- numExPressureAtoms
: Molecule
- Numextra
: AmberParm7Reader::Ambertoppar
- numFepFinal
: Molecule
- numFepInitial
: Molecule
- numFixedAtoms
: Molecule
, Patch
- numFixedGroups
: HydroBasedMsg
, Molecule
- numFixedRigidBonds
: HydroBasedMsg
, Molecule
- numForces
: QMForceMsg
, QMGrpResMsg
- numFreeAtoms
: ComputeNonbondedMIC::patch_record
, CudaComputeNonbonded::PatchRecord
, CudaPatchRecord
, ComputeNonbondedCUDA::patch_record
- numGaussPair
: Molecule
- numGBISPairlists
: ComputeNonbondedPair
, ComputeNonbondedSelf
- numGoAtoms
: Molecule
- NumGoChains
: Molecule
- numGridCutoff
: ComputeMsmMgr
- numGridforceGrids
: Molecule
- numGridforces
: Molecule
- numGrids
: ComputePmeUtil
- NumGromacsPairParams
: Parameters
- numHomePatches()
: PatchMap
- numhosts
: lphost
- numHydrogenGroups
: Molecule
- NumImproperParams
: Parameters
- numImpropers
: MolInfoMsg
, Molecule
- numinputprocs
: SimParameters
- numJtiles
: TileListStat
- numLevels()
: ComputeMsmMgr
- numLJPair
: Molecule
- numLJPairs
: MolInfoMsg
- numLonepairs
: Molecule
- numLphosts
: Molecule
- numLssDat
: QMForceMsg
- numMigrationGroups
: Molecule
- numMlBuf
: HomePatch
- numMovDrag
: Molecule
- numMultipleDihedrals
: Molecule
- numMultipleImpropers
: Molecule
- NumNbtholePairParams
: Parameters
- numNewNodes
: ComputeMapChangeMsg
- numNewNumPartitions
: ComputeMapChangeMsg
- numNodes()
: Node
- numNodesWithPatches()
: PatchMap
- numNodesWithProxies
: ProxyNodeAwareSpanningTreeMsg
- NumOfFields
: AmberParm7Reader::FortranFormatSpecifier
- numOffset
: TupleSignature
- numoutputprocs
: SimParameters
- numoutputwrts
: SimParameters
- numPair
: Molecule
- numParticles
: ComputeDPMEDataMsg
, ComputeDPMEResultsMsg
- numPartitions
: ComputeMap::ComputeData
, ComputeMap
- numParts
: nonbonded
, ComputeNonbondedSelf
, ComputeLCPO
, ComputeNonbondedMIC::compute_record
, ComputeNonbondedPair
- numPatches()
: PatchMap
, Rebalancer
, PatchProxyListMsg
, GBISParamStruct
- numPatchesOnNode()
: PatchMap
- numPCIndxs
: QMCoordMsg
- numPes
: proxyTreeNode
- numPesAvailable
: Rebalancer
, SplitComputesMsg
- numPesOfNode
: ProxyNodeAwareSpanningTreeMsg
- numPids()
: ComputeMap
, ComputeMap::ComputeData
- numPidsAllocated
: ComputeMap
- numProxies
: ProxyListInfo
, ProxyMgr
, Rebalancer
- numQMAtoms
: QMGrpCalcMsg
- numRealBonds
: Molecule
- numRealPntChrgs
: QMGrpCalcMsg
- numRecvs
: msm::PatchDiagram
- numRecvsCharge
: msm::BlockDiagram
- numRecvsPotential
: msm::BlockDiagram
- numrep
: msm::FoldFactor
- numRigidBonds
: MolInfoMsg
, Molecule
- numRotDrag
: Molecule
- numSlaves
: ComputeNonbondedCUDA
, ComputeNonbondedMIC
- numStepsToRun
: LdbCoordinator
- numStirredAtoms
: Molecule
- numStrayAtoms
: PmePencilY
, PmePencilX
, PmePencilXY
, PmeRunMsg
, PmeBlockMsg
, PmePencilZ
, PmePencilXYZ
, PmeForceMsg
- numSubgrids
: GridforceFullBaseGrid
- NumTablePairParams
: Parameters
- NumTableParams
: Parameters
- numTholes
: Molecule
- numTileLists
: TileListStat
- numTileListsGBIS
: TileListStat
- numTotalExclusions
: Molecule
- numTraceSteps
: SimParameters
- NumVdwPairParams
: Parameters
- NumVdwParams
: Parameters
- NumVdwParamsAssigned
: Parameters
- numVirialContrib
: ComputeMsmMgr
- numZeroMassAtoms
: Molecule
- nx
: NL_Msm_t
, Int3
, Int2
, TransposeBatch< T >
, PmeTransMsg
, LocalPmeInfo
- ny
: PmeXPencil
, PmeUntransMsg
, Int3
, Int2
, NL_Msm_t
- ny_after_transpose
: LocalPmeInfo
- nz
: NL_Msm_t
, PmeXPencil
, Int3