Here is a list of all class members with links to the classes they belong to:
- m -
- m_Kf
: ARestraint
- m_LambdaKf
: ARestraint
- m_LambdaRef
: ARestraint
- m_NumGroups
: ARestraint
- m_pCOMs
: ARestraint
- m_pGroups
: ARestraint
- m_x
: AVector
- m_y
: AVector
- m_z
: AVector
- main()
: main
- maingrid
: GridforceFullSubGrid
- makeHeaps()
: Rebalancer
- makePatches()
: PatchMap
- makeTwoHeaps()
: Rebalancer
- mallocTest()
: Node
, SimParameters
- mallocTest_size
: Node
- mallocTestQd()
: Node
- many_allowed
: ParseOptions::DataElement
- map
: ComputeMsmMgr
, msm::PatchData
, MsmGridCutoffKernel< Vtype, Mtype >
, MsmBlockKernel< Vtype, Mtype >
- mapComputes()
: WorkDistrib
- mapData()
: ComputeMsmMgr
- margin
: SimParameters
- marginViolations
: Controller
, HomePatch
- martiniDielAllow
: SimParameters
- martiniSwitching
: SimParameters
- mass
: ComputeQMPntChrg
, LSSDataStr
, FullAtom
, atom_constants
, ComputeGBISAtom
- Masses
: parm
, AmberParm7Reader::Ambertoppar
- massIdx
: BasicAtomInfo
, OutputAtomRecord::shortVals
- master
: SlaveInitMsg
, NonbondedCUDASlaveMsg
, NonbondedMICSlaveMsg
, ComputeNonbondedCUDA
, ComputeNonbondedMIC
- MASTER
: PDBData
- master_pe
: ComputePmeMgr
- masterPe
: ComputeNonbondedCUDA
, ComputeNonbondedMIC
- mat
: Matrix4
, Matrix4Symmetry
- MathArray()
: MathArray< Elem, Size >
- Matrix4()
: Matrix4
- Matrix4Symmetry()
: Matrix4Symmetry
- Matrix4TMD()
: Matrix4TMD
- MAX
: MsmProfiler
- max
: eABF
, ExclusionCheck
, msm::Array< T >
, SubmitReduction
- MAX
: MsmTimer
- max_a()
: PatchMap
- max_b()
: PatchMap
- max_c()
: PatchMap
- max_lyzd
: NL_Msm_t
- max_lzd
: NL_Msm_t
- MAX_NSTENCIL_SIZE
: ComputeMsmMgr
- MAX_NSTENCIL_SKIP_ZERO
: ComputeMsmMgr
- MAX_POLY_DEGREE
: ComputeMsmMgr
- maxAtomMovement
: Flags
- maxatoms
: NL_Msm_t
- maxbins
: NL_Msm_t
- maxCompute
: SplitComputesMsg
- maxComputeId
: SplitComputesMsg
- maxExclusionFlags
: SimParameters
- maxForceMerged
: Flags
- maxForceUsed
: Flags
- maxGroupRadius
: GBISParamStruct
, Flags
- maxHeap()
: maxHeap
- maxHydrogenGroupSize
: Molecule
- maximumMove
: SimParameters
, Sequencer
- maxlevels
: MsmBlockProxyMsg
, MsmC1HermiteBlockProxyMsg
, NL_Msm_t
- maxMigrationGroupSize
: Molecule
- maxNumForces
: Results
- MaxOneAway
: PatchMap
- MaxOneOrTwoAway
: PatchMap
- maxPairPart
: SimParameters
- maxPart
: ComputeLCPO
, ComputeNonbondedPair
, ComputeNonbondedSelf
, nonbonded
- maxPatches
: SimParameters
- maxSelfPart
: SimParameters
- MaxTwoAway
: PatchMap
- maxUnsplit
: SplitComputesMsg
- Mbona
: parm
, AmberParm7Reader::Ambertoppar
- Mbper
: AmberParm7Reader::Ambertoppar
- Mdper
: AmberParm7Reader::Ambertoppar
- measure()
: ScriptTcl
- measureMemory()
: Node
- melem
: C1Matrix
- meMMQMGrp()
: meMMQMGrp
- memusage
: memusageinit
- memusageinit()
: memusageinit
- mergeCrossterms
: SimParameters
- mergefile()
: eABF
- mergeForcesOnPatch()
: ComputePmeCUDADevice
- mergegrids
: cuda_args_t
- messageBOCCheckIn()
: Node
- messageEnqueueWork()
: CudaComputeNonbonded
, WorkDistrib
- messageFinishCUDA()
: WorkDistrib
- messageFinishMIC()
: WorkDistrib
- messageFinishPatch()
: ComputeNonbondedCUDA
- messageRun()
: Node
- messageStartUp()
: Node
- Mgper
: AmberParm7Reader::Ambertoppar
- mgr
: msm::PatchData
, ComputePmeMgr::cuda_submit_charges_args
- mgridforcelist
: SimParameters
- mgridforceOn
: SimParameters
- MGridforceParams()
: MGridforceParams
- MGridforceParamsList()
: MGridforceParamsList
- mgrLocal
: MsmGridCutoffKernel< Vtype, Mtype >
, MsmBlockKernel< Vtype, Mtype >
- mgrProxy
: MsmBlockKernel< Vtype, Mtype >
, InitDeviceMsg2
- mic_deviceThreshold
: SimParameters
- mic_hostSplit
: SimParameters
- mic_numParts_pair_p1
: SimParameters
- mic_numParts_pair_p2
: SimParameters
- mic_numParts_self_p1
: SimParameters
- mic_singleKernel
: SimParameters
- mic_unloadMICPEs
: SimParameters
- Migrate()
: LdbCoordinator
- MigrateAtomsCombinedMsg()
: MigrateAtomsCombinedMsg
- migrateAtomsMGrp()
: ParallelIOMgr
- MigrateAtomsMsg()
: MigrateAtomsMsg
- migrateMsgs
: LdbCoordinator
- migrationGroupSize
: FullAtom
- migrationList
: MigrateAtomsMsg
, MigrateAtomsCombinedMsg
- min
: eABF
, ExclusionCheck
- min_a()
: PatchMap
- min_b()
: PatchMap
- min_c()
: PatchMap
- min_energy
: Controller
- min_f_dot_f
: Controller
- min_f_dot_v
: Controller
- min_huge_count
: Controller
- min_reduction
: Controller
, Sequencer
- min_v_dot_v
: Controller
- minAtomsPerPatch
: SimParameters
- minBabyStep
: SimParameters
- minHeap()
: minHeap
- minimizationQuenchVelocity()
: Sequencer
- minimize()
: Controller
, Sequencer
- minimize_rattle2()
: HomePatch
- minimizeCGOn
: SimParameters
- minimizeCoefficient
: ControllerBroadcasts
- minimizeMoveDownhill()
: Sequencer
- minimizeOn
: SimParameters
- minLineGoal
: SimParameters
- minPart
: ComputeNonbondedPair
, ComputeLCPO
, ComputeNonbondedSelf
, nonbonded
- minpoint()
: minpoint
- minTinyStep
: SimParameters
- minVerbose
: SimParameters
- miscForcesOn
: SimParameters
- MIStream()
: MIStream
- mList
: MigrationInfo
- mmIndx
: meMMQMGrp
- mod2()
: floatcomplex
- MODEL
: PDBData
- modExclCnt
: ExclusionSignature
- modExclOffset
: ExclSigInfo
- modified
: ExclElem
, Exclusion
- modifyAppliedForces()
: GlobalMaster
- modifyForcedAtoms()
: GlobalMaster
- modifyGridObjForces()
: GlobalMaster
- modifyGroupForces()
: GlobalMaster
- modifyRequestedAtoms()
: GlobalMaster
- modifyRequestedGridObjects()
: GlobalMaster
- modifyRequestedGroups()
: GlobalMaster
- modOffset
: ExclusionSignature
- mol
: ComputeNonbondedUtil
- molecule
: Node
- Molecule()
: Molecule
- MolInst()
: MolInst
- mollyAverage()
: HomePatch
- mollyIter
: SimParameters
- mollyMollify()
: HomePatch
- mollyOn
: SimParameters
- mollyTol
: SimParameters
- momentumCorrection
: ControllerBroadcasts
- momentumSqrSum
: Controller
- MOStream()
: MOStream
- movDragFile
: SimParameters
- movDragGlobVel
: SimParameters
- movDragOn
: SimParameters
- movDragVelFile
: SimParameters
- moveAllBy()
: PatchMgr
- moveAtom()
: PatchMgr
- MovePatch()
: MovePatch
- movePatch()
: PatchMgr
- MovePatchesMsg()
: MovePatchesMsg
- moves
: LocalLBInfoMsg
- moveto()
: parm
, MoveAtomMsg
- moveToNode
: ComputeMap::ComputeData
- movingConstraintsOn
: SimParameters
- movingConsVel
: SimParameters
- Mphia
: parm
, AmberParm7Reader::Ambertoppar
- MPID
: OutputAtomRecord::integerVals
, InputAtom
, HydrogenGroupID
- msg
: PmeSharedTransMsg
, TaggedMsg
, ComputeNonbondedCUDA::patch_record
, PmeSharedUntransMsg
- msgbuf
: HomePatch
- msgSize
: TaggedMsg
- msm::PatchData
: ComputeMsmMgr
- MSMApprox
: SimParameters
- msmBlock
: ComputeMsmMgr
- MsmBlock()
: MsmBlock
, ComputeMsmMgr
, MsmBlock
- msmBlockElementProxy
: MsmGridCutoff
, MsmC1HermiteGridCutoff
- msmBlockElementProxyData
: MsmC1HermiteGridCutoffSetupMsg
, MsmGridCutoffSetupMsg
- MsmBlockKernel()
: MsmBlockKernel< Vtype, Mtype >
- MsmBlockMap()
: MsmBlockMap
, ComputeMsmMgr
, MsmBlockMap
- msmBlockProxyData
: MsmBlockProxyMsg
, MsmC1HermiteBlockProxyMsg
- MSMBlockSizeX
: SimParameters
- MSMBlockSizeY
: SimParameters
- MSMBlockSizeZ
: SimParameters
- MsmC1HermiteBlock()
: MsmC1HermiteBlock
- msmC1HermiteBlock
: ComputeMsmMgr
- msmC1HermiteGridCutoff
: ComputeMsmMgr
- MsmC1HermiteGridCutoff()
: MsmC1HermiteGridCutoff
- msmCompute
: ComputeMsmMgr
- msmflags
: NL_Msm_t
- MsmGridCutoff()
: MsmGridCutoff
- msmGridCutoff
: ComputeMsmMgr
- msmGridCutoffBroadcast
: MsmBlock
, MsmC1HermiteBlock
- MsmGridCutoffInitMsg()
: MsmGridCutoffInitMsg
- MsmGridCutoffKernel()
: MsmGridCutoffKernel< Vtype, Mtype >
- MsmGridCutoffMap
: ComputeMsmMgr
, MsmGridCutoffMap
- msmGridCutoffProxyData
: MsmGridCutoffProxyMsg
, MsmC1HermiteGridCutoffProxyMsg
- msmGridCutoffReduction
: MsmBlock
, MsmC1HermiteBlock
- MSMGridSpacing
: SimParameters
- MSMLevels
: SimParameters
- MSMOn
: SimParameters
- MSMPadding
: SimParameters
- MsmProfiler()
: MsmProfiler
- msmProxy
: ComputeMsmMgr
- MSMQuality
: SimParameters
- MsmSerialOn
: SimParameters
- MSMSplit
: SimParameters
- MsmTimer()
: MsmTimer
- MSMxmax
: SimParameters
- MSMxmin
: SimParameters
- MSMymax
: SimParameters
- MSMymin
: SimParameters
- MSMzmax
: SimParameters
- MSMzmin
: SimParameters
- Mtheta
: AmberParm7Reader::Ambertoppar
, parm
- MTRIX
: PDBData
- MTSAlgorithm
: SimParameters
- multicastMgr
: BOCgroup
- multigatorCalcEnthalpy()
: Controller
- multigratorNoseHooverChainLength
: SimParameters
- multigratorNu
: Controller
- multigratorNuT
: Controller
- multigratorOmega
: Controller
- multigratorOn
: SimParameters
- multigratorPressure()
: Sequencer
, Controller
- multigratorPressureFreq
: SimParameters
- multigratorPressureRelaxationTime
: SimParameters
- multigratorPressureTarget
: SimParameters
- multigratorReduction
: Sequencer
, Controller
- multigratorTemperature()
: Controller
, Sequencer
- multigratorTemperatureFreq
: SimParameters
- multigratorTemperatureRelaxationTime
: SimParameters
- multigratorTemperatureTarget
: SimParameters
- multigratorXi
: Controller
- multigratorXiT
: Controller
- multigratorZeta
: Controller
- multiplicity
: improper_params
, DihedralValue
, dihedral_params
, ImproperValue
, QMGrpCalcMsg
- multirefine()
: Rebalancer
- multmatrix()
: Matrix4Symmetry
, Matrix4
, Matrix4TMD
- multnorm3d()
: Matrix4
- multpoint()
: Matrix4Symmetry
, Matrix4TMD
- multpoint3d()
: Matrix4
- multpoint4d()
: Matrix4
- mygridnum
: GridforceGrid
- myHandle
: LdbCoordinator
- myid()
: Node
- myKSpace
: PmeXPencil
- myOMid
: LdbCoordinator
- myRemove()
: IRSet
- mySegid
: ResidueLookupElem