Here is a list of all class members with links to the classes they belong to:
- i -
- i
: floatcomplex
, CudaComputeNonbondedMsg
, PmeAtomMsg
, msm::Ivec
, Transform
, RegisterPatchMsg
, PmeDoneMsg
, doublecomplex
, ijpair
, DeviceDataMsg
, CudaBond
, CudaAngle
, netint
, CudaDihedral
, CudaExclusion
- i1
: CudaCrossterm
- i2
: CudaCrossterm
- i3
: CudaCrossterm
- i4
: CudaCrossterm
- i5
: CudaCrossterm
- i6
: CudaCrossterm
- i7
: CudaCrossterm
- i8
: CudaCrossterm
- ia
: RattleParam
, msm::IndexRange
- Iac
: parm
, AmberParm7Reader::Ambertoppar
- iatomFreeSize
: PatchPairRecord
- iatomSize
: PatchPairRecord
- iatomStart
: TileList
- ib()
: msm::IndexRange
, RattleParam
- Iblo
: parm
, AmberParm7Reader::Ambertoppar
- icnt
: HomePatch::RattleList
- icompute
: TileList
- id
: BroadcastClient
, BOID
, ComputeExtAtom
, ComputeFmmSerialAtom
, ComputeGBISAtom
, ComputeMsmSerialAtom
, ComputeQMAtom
, ComputeQMPntChrg
, QMAtomData
, QMForce
, msm::AtomCoord
, CompAtomExt
, Iterator
- ID
: idIndxStr
- Id
: InfoRecord
- idata
: ParseOptions::DataElement
- idef
: ParseOptions::DataElement
- identity()
: Matrix4TMD
, Matrix4
, Matrix4Symmetry
, Tensor
- idIndx
: lssDistSort
- idIndxStr()
: idIndxStr
- idleTime
: processorInfo
- idnum
: GridMsg
- IfBox
: parm
- Ifbox
: AmberParm7Reader::Ambertoppar
- IfCap
: parm
- Ifcap
: AmberParm7Reader::Ambertoppar
- Ifpert
: AmberParm7Reader::Ambertoppar
- ig
: HomePatch::RattleList
- ignoreMass
: SimParameters
- ignoresharing
: cuda_args_t
- ijpair()
: ijpair
- imd
: Node
- IMDfreq
: SimParameters
- IMDignore
: GlobalMasterIMD
, SimParameters
- IMDignoreForces
: GlobalMasterIMD
, SimParameters
- IMDon
: SimParameters
- IMDOutput
: GlobalMasterIMD
, IMDOutput
- IMDport
: SimParameters
- IMDwait
: GlobalMasterIMD
, SimParameters
- improper_array
: Parameters
- improper_type
: improper
- ImproperAt1
: AmberParm7Reader::Ambertoppar
- ImproperAt2
: AmberParm7Reader::Ambertoppar
- ImproperAt3
: AmberParm7Reader::Ambertoppar
- ImproperAt4
: AmberParm7Reader::Ambertoppar
- improperCnt
: AtomSignature
- ImproperElem
: Molecule
, ImproperElem
- improperEnergyIndex
: ImproperElem
- improperEnergyIndex_f
: ImproperElem
- improperEnergyIndex_ti_1
: ImproperElem
- improperEnergyIndex_ti_2
: ImproperElem
- ImproperForceConstants
: AmberParm7Reader::Ambertoppar
- ImproperNum
: AmberParm7Reader::Ambertoppar
- ImproperPhases
: AmberParm7Reader::Ambertoppar
- improperSigIndices
: AtomSigInfo
- improperSigs
: AtomSignature
- imsg
: PmePencil< T >
, PmePencilXY
, PmePencilX
, PmePencilY
, PmePencilZ
- imsgb
: PmePencil< T >
- IN_PROCESS
: CollectionMaster
- IncCurrStep()
: ALambdaControl
, ALambdaManager
- increment()
: ProxyUsage
- incrSTLoad()
: Rebalancer
- ind1
: indexed_vdw_pair
, indexed_nbthole_pair
, nbthole_pair_value
, indexed_table_pair
- ind2
: indexed_vdw_pair
, indexed_nbthole_pair
, nbthole_pair_value
, indexed_table_pair
- index
: WorkIndex
, pntChrgDist
, vmdforce
, position_index
, StreamMessage
, LocalID
, __sort_entry
, bond_params
, angle_params
, dihedral_params
, improper_params
, crossterm_params
, vdw_params
, nbthole_pair_params
, ParseOptions::DataElement
, Lattice
, SortedArray< Type >
, NonbondedCUDASlaveMsg
, NonbondedMICSlaveMsg
- index_a()
: PatchMap
- index_b()
: PatchMap
- index_c()
: PatchMap
- index_for_key()
: MGridforceParamsList
- indexGridCutoff
: msm::BlockDiagram
- IndexOffset
: ComputeMsmMgr
- IndexRange()
: msm::IndexRange
- indexRangeOfBlock()
: msm::Map
- indexRangeOfBlockFold()
: msm::Map
- inds2
: GridforceFullBaseGrid::GridIndices
- indx
: idIndxStr
- indxGaussA
: GroGaussPair
, Molecule
- indxGaussB
: GroGaussPair
, Molecule
- indxLJA
: GroLJPair
, Molecule
- indxLJB
: GroLJPair
, Molecule
- info
: heapRecord
, listNode
- infostream()
: infostream
- init()
: BackEnd
, msm::PatchData
, MsmGridCutoffKernel< Vtype, Mtype >
, MsmBlockKernel< Vtype, Mtype >
, GBISResults< 1 >
, GBISResults< 2 >
, GBISResults< 3 >
, msm::PriorityQueue< T >
, msm::GridFixed< T, N >
, msm::Grid< T >
, FFTCompute
, Random
, SortableResizeArray< Type >
- Init()
: ALambdaControl
- init_atom()
: colvarproxy_namd
- init_atom_group()
: colvarproxy_namd
- init_tcl_pointers()
: colvarproxy_namd
- init_volmap()
: colvarproxy_namd
- initAvgPeLoad
: CollectLoadsMsg
- initBlockSizes()
: PmePencilXY
, PmePencilX
, PmePencilY
, PmePencilZ
- initdata
: PmePencil< T >
- InitDeviceMsg()
: InitDeviceMsg
- InitDeviceMsg2()
: InitDeviceMsg2
- initHostDeviceLDB()
: WorkDistrib
- initialize()
: Compute
, ComputeCUDAMgr
, ComputeHomePatch
, ComputeHomePatches
, ComputeHomeTuples< T, S, P >
, ComputeLCPO
, ComputeMsmMgr
, ComputeNonbondedPair
, ComputeNonbondedSelf
, ComputePatch
, ComputePatchPair
, ComputePmeMgr
, NodePmeMgr
, ComputePme
, ComputePmeCUDA
, ComputePmeCUDADevice
, ComputePmeCUDAMgr
, Molecule
, ComputeQM
, ComputeSelfTuples< T, S, P >
, CudaComputeNonbonded
, CudaPmePencilXYZ
, CudaPmePencilXY
, CudaPmePencilX
, CudaPmePencilY
, CudaPmePencilZ
, DeviceCUDA
, eABF
, eABF1D
, GridforceGrid
, GridforceFullMainGrid
, GridforceFullSubGrid
, GridforceLiteGrid
, LdbCoordinator
, ParallelIOMgr
- initialize_computes()
: ComputePmeMgr
- initialize_config_data()
: SimParameters
- initialize_create()
: ComputeMsmMgr
- initialize_devices()
: ComputeCUDAMgr
- initialize_pencils()
: ComputePmeMgr
, ComputePmeCUDAMgr
- initializeDevice()
: CudaPmePencilXYZ
, CudaPmePencilXY
, CudaPmePencilX
, CudaPmePencilY
, CudaPmePencilZ
- initializePatches()
: ComputePmeCUDADevice
- initialTemp
: SimParameters
- initMaxPatchProxies
: CollectLoadsMsg
- initMaxPeLoad
: CollectLoadsMsg
- initMaxPeProxies
: CollectLoadsMsg
- initMemory
: CollectLoadsMsg
- InitProxyUsage()
: Rebalancer
- initPtrs()
: ComputeMap
- initQi()
: GBISInput< 1 >
, GBISInput< 2 >
, GBISInput< 3 >
- initQj()
: GBISInput< 2 >
, GBISInput< 3 >
, GBISInput< 1 >
- initRSS
: Node
- initTime
: CollectLoadsMsg
- initTmpPatchAtomsList()
: PatchMap
- initTotalProxies
: CollectLoadsMsg
- initVirialContrib()
: ComputeMsmMgr
- initVM
: Node
- inMigration
: HomePatch
- inputfile
: eABF
- insert()
: minHeap
, msm::PriorityQueue< T >
, ResizeArray< T >
, IRSet
, UniqueSortedArray< Type >
, SortedArray< Type >
, maxHeap
- insertioncode()
: PDBAtom
- Instance()
: AtomMap
, ComputeMap
, PatchMap
- INT
: ParseOptions::DataElement
- Int
: AmberParm7Reader::FortranData
- Int2()
: Int2
- Int3()
: Int3
- integer()
: Random
- integrate()
: Controller
, Sequencer
- Integrate_MCTI()
: ALambdaControl
, ALambdaManager
- integrateClusterSize()
: ParallelIOMgr
- integrateMigratedAtoms()
: ParallelIOMgr
- INTERP
: MsmTimer
- interpolation()
: msm::PatchData
- interpolationC1Hermite()
: msm::PatchData
- intpair()
: intpair
- intRad
: Patch
, ComputeNonbondedCUDA::patch_record
, CudaComputeNonbonded::PatchRecord
, ComputeNonbondedMIC::patch_record
, ComputeNonbondedSelf
, ComputeNonbondedPair
, GBISParamStruct
- intRad0j
: GBISInput< 1 >
- intRadBox
: CudaComputeNonbonded::PatchRecord
, ComputeNonbondedPair
, ComputeNonbondedMIC::patch_record
, ComputeNonbondedCUDA::patch_record
, ComputeNonbondedSelf
, Patch
- intRadBoxClosed()
: Patch
- intRadComputeList
: Patch
- intRadIS
: GBISInput< 3 >
- intRadJ0
: GBISInput< 3 >
- intRadList
: ProxyDataMsg
- intRadSi
: GBISInput< 1 >
- intRadSJ
: GBISInput< 3 >
- inv
: GridforceFullBaseGrid
, GridforceLiteGrid
- invalidPatch
: ComputeLCPO
- inverse()
: Matrix4
- ioffsetXYZ
: CudaExclusion
, CudaBond
, CudaDihedral
, CudaAngle
- ioMgr
: BOCgroup
- ion_concentration
: SimParameters
- Ipatm
: parm
- Ipol
: AmberParm7Reader::Ambertoppar
- Ipres
: parm
, AmberParm7Reader::Ambertoppar
- iptr
: ParseOptions::DataElement
- Iptres
: AmberParm7Reader::Ambertoppar
, parm
- IRSet()
: IRSet
- is_atom_constorqued()
: Molecule
- is_atom_constrained()
: Molecule
- is_atom_exPressure()
: Molecule
- is_atom_fixed()
: Molecule
- is_atom_gridforced()
: Molecule
- is_atom_movdragged()
: Molecule
- is_atom_rotdragged()
: Molecule
- is_atom_stirred()
: Molecule
- is_defined
: ParseOptions::DataElement
- is_drude()
: Molecule
- is_drude_psf
: Molecule
- is_group_fixed()
: Molecule
- is_hydrogen()
: Molecule
- is_hydrogenGroupParent()
: Molecule
- is_lonepairs_psf
: Molecule
- is_lp()
: Molecule
- is_open()
: ofstream_namd
- is_optional
: ParseOptions::DataElement
- is_oxygen()
: Molecule
- is_water()
: Molecule
- IsActive()
: ALambdaControl
- isAvailableOn()
: Rebalancer
- isBasePatch
: ComputeHomeTuples< T, S, P >
- isBFactorValid
: Molecule
- IsCharmmFF
: AmberParm7Reader::Ambertoppar
- isEmpty()
: TupleSignature
- IsEndOf_MCTI()
: ALambdaControl
, ALambdaManager
- IsEndOf_MCTI_Step()
: ALambdaControl
, ALambdaManager
- iSet
: OutputAtomRecord
- IsFirstStep()
: ALambdaControl
, ALambdaManager
- isfold
: MsmGridCutoffKernel< Vtype, Mtype >
- isForceNonZero
: ProxyCombinedResultRawMsg
- IsForcing()
: AForcingPosRestraint
, AForcingDiheRestraint
, ARestraint
, AForcingDistRestraint
, AForcingAngleRestraint
- isGP
: InputAtom
, HydrogenGroupID
- isize
: FFTCompute
, PmeTranspose
- isLocal
: ComputeNonbondedMIC::patch_record
, ComputeNonbondedCUDA::patch_record
- isMICProcessor()
: ComputeMgr
- isMP
: InputAtom
, HydrogenGroupID
- isOccupancyValid
: Molecule
- isOpen()
: OwnerBox< Owner, Data >
- isOutputProcessor()
: ParallelIOMgr
- IsPadding
: AmberParm7Reader::FortranFormatSpecifier
- isPeerDevice
: DeviceBuffer
- isPmeDevice()
: ComputePmeCUDAMgr
- isPmeNode()
: ComputePmeCUDAMgr
- isPmePe()
: ComputePmeCUDAMgr
- ispu
: ComputeMsmMgr
- ispv
: ComputeMsmMgr
- ispw
: ComputeMsmMgr
- ispx
: msm::Map
- ispy
: msm::Map
- ispz
: msm::Map
- isReal
: TupleSignature
- isRecvSpanningTreeOn()
: SimParameters
- isRecvSpanningTreeUnset()
: SimParameters
- isSameNode
: ComputeNonbondedCUDA::patch_record
, CudaComputeNonbonded::PatchRecord
- isSamePhysicalNode
: CudaComputeNonbonded::PatchRecord
, ComputeNonbondedCUDA::patch_record
- isSelf
: ComputeNonbondedMIC::compute_record
- isSendSpanningTreeOn()
: SimParameters
- isSendSpanningTreeUnset()
: SimParameters
- issetfromptr()
: ParseOptions
- issetinparseopts()
: SimParameters
- isSorted
: SortedArray< Type >
- IsTimeToClearAccumulator()
: ALambdaManager
, ALambdaControl
- IsTimeToPrint()
: ALambdaManager
, ALambdaControl
- IsTimeToPrint_dU_dLambda()
: ALambdaControl
, ALambdaManager
- istruefromptr()
: ParseOptions
- istrueinparseopts()
: SimParameters
- isUsed()
: Entry< Elem >
- isValid
: InputAtom
- isWater
: CompAtom
- isZero
: ProxyResultVarsizeMsg
- item()
: ResizeArray< T >
, RequireReduction
, SubmitReduction
- iterator
: Array< Elem, Size >
, IRSet
, minHeap
, ResizeArray< T >
, maxHeap
- ititl
: AmberParm7Reader::Ambertoppar
, parm
- itype
: CudaAngle
, CudaBond
, CudaDihedral
, CudaCrossterm
- Ivec()
: msm::Ivec
- ix
: gather_t< T, order >
- iy
: gather_t< T, order >
- iz
: gather_t< T, order >