Here is a list of all class members with links to the classes they belong to:
- e -
- e
: GridforceFullBaseGrid
, GridforceLiteGrid
- e_dim
: TopoManagerWrapper
- e_mod
: TopoManagerWrapper
- e_rot
: TopoManagerWrapper
- eABF()
: eABF
- eABF1D()
: eABF1D
- eABF2D()
: eABF2D
- Eangle
: IMDEnergies
- EarlyExit()
: ARestraint
- earlyExit()
: Node
- easy_calc()
: GlobalMasterEasy
, GlobalMasterMisc
- easy_init()
: GlobalMasterEasy
, GlobalMasterMisc
- Ebond
: IMDEnergies
- Edihe
: IMDEnergies
- Eelec
: IMDEnergies
- eField
: SimParameters
- eFieldFreq
: SimParameters
- eFieldNormalized
: SimParameters
- eFieldOn
: SimParameters
- eFieldPhase
: SimParameters
- eh
: msm::PatchData
, MsmGridCutoffKernel< Vtype, Mtype >
, MsmBlockKernel< Vtype, Mtype >
, NL_Msm_t
- eh_c1hermite
: msm::PatchData
- eh_f
: NL_Msm_t
- ehBlockSend
: MsmGridCutoffInitMsg
- ehblockSend
: MsmGridCutoffKernel< Vtype, Mtype >
- ehfold
: MsmGridCutoffKernel< Vtype, Mtype >
- ehfull
: MsmGridCutoff
, MsmC1HermiteGridCutoff
- ehProlongated
: MsmBlockKernel< Vtype, Mtype >
- eia
: MsmGridCutoffKernel< Vtype, Mtype >
- eib
: MsmGridCutoffKernel< Vtype, Mtype >
- eik
: ComputeEwaldMsg
- Eimpr
: IMDEnergies
- eja
: MsmGridCutoffKernel< Vtype, Mtype >
- ejb
: MsmGridCutoffKernel< Vtype, Mtype >
- eka
: MsmGridCutoffKernel< Vtype, Mtype >
- ekb
: MsmGridCutoffKernel< Vtype, Mtype >
- electEnergy
: Controller
- electEnergy_f
: Controller
- electEnergy_ti_1
: Controller
- electEnergy_ti_2
: Controller
- electEnergyIndex
: ExclElem
, ComputeNonbondedUtil
- electEnergyIndex_s
: ComputeNonbondedUtil
- electEnergyIndex_ti_1
: ComputeNonbondedUtil
- electEnergyIndex_ti_2
: ComputeNonbondedUtil
- electEnergyPME_ti_1
: Controller
- electEnergyPME_ti_2
: Controller
- electEnergySlow
: Controller
- electEnergySlow_f
: Controller
- electEnergySlow_ti_1
: Controller
- electEnergySlow_ti_2
: Controller
- elem()
: msm::GridFixed< T, N >
, msm::Grid< T >
, msm::Array< T >
, msm::GridFixed< T, N >
- element
: QMAtomData
, PDBAtom
- emptyPatchLoad
: SimParameters
- enableComputeGlobalResults()
: ComputeMgr
- enableEarlyExit()
: Node
- enableExitScheduler()
: Node
- enableScriptBarrier()
: Node
- end()
: Array< Elem, Size >
, MOStream
, ResizeArray< T >
, ResizeArrayIter< Type >
, ResizeArrayPrimIter< T >
, UniqueSetIter< Type >
- END
: PDBData
- end_charges
: ComputePmeMgr
- end_forces
: ComputePmeMgr
- endd()
: datastream
- ENDMDL
: PDBData
- endPE
: LocalLBInfoMsg
- endtime
: wkf_timer
- endWork()
: LdbCoordinator
- energies_virials_SIZE
: ComputeBondedCUDAKernel
- energy
: ExtForceMsg
, FmmSerialForceMsg
, msm::PatchData
, MsmSerialForceMsg
, QMForceMsg
, RecipVirial_t
, Output
- energyAndVirialDone()
: CudaPmePencilXYZ
, CudaPmePencilZ
- energyAndVirialSetCallback()
: CudaPmeKSpaceCompute
- energyCorr
: QMGrpResMsg
- energyElec
: TileListVirialEnergy
, VirialEnergy
- energyGBIS
: TileListVirialEnergy
, VirialEnergy
- energyIndex_ANGLE
: ComputeBondedCUDAKernel
- energyIndex_BOND
: ComputeBondedCUDAKernel
- energyIndex_CROSSTERM
: ComputeBondedCUDAKernel
- energyIndex_DIHEDRAL
: ComputeBondedCUDAKernel
- energyIndex_ELECT
: ComputeBondedCUDAKernel
- energyIndex_ELECT_SLOW
: ComputeBondedCUDAKernel
- energyIndex_IMPROPER
: ComputeBondedCUDAKernel
- energyIndex_LJ
: ComputeBondedCUDAKernel
- energyNative
: Molecule
- energyNonnative
: Molecule
- energyOrig
: QMGrpResMsg
- energySlow
: TileListVirialEnergy
, VirialEnergy
- energyVdw
: TileListVirialEnergy
, VirialEnergy
- eni
: MsmGridCutoffKernel< Vtype, Mtype >
- enj
: MsmGridCutoffKernel< Vtype, Mtype >
- enk
: MsmGridCutoffKernel< Vtype, Mtype >
- enqueue()
: CollectionMaster::CollectVectorSequence
- enqueueAngles()
: WorkDistrib
- enqueueAniso()
: WorkDistrib
- enqueueBonds()
: WorkDistrib
- enqueueCollections()
: Controller
- enqueueCrossterms()
: WorkDistrib
- enqueueCUDA()
: WorkDistrib
- enqueueCUDAP2()
: WorkDistrib
- enqueueCUDAP3()
: WorkDistrib
- enqueueDihedrals()
: WorkDistrib
- enqueueExcls()
: WorkDistrib
- enqueueForces()
: CollectionMaster
- enqueueGromacsPair()
: WorkDistrib
- enqueueImpropers()
: WorkDistrib
- enqueueLCPO()
: WorkDistrib
- enqueueMIC()
: WorkDistrib
- enqueuePme()
: WorkDistrib
- enqueuePositions()
: CollectionMaster
- enqueueSelfA1()
: WorkDistrib
- enqueueSelfA2()
: WorkDistrib
- enqueueSelfA3()
: WorkDistrib
- enqueueSelfB1()
: WorkDistrib
- enqueueSelfB2()
: WorkDistrib
- enqueueSelfB3()
: WorkDistrib
- enqueueThole()
: WorkDistrib
- enqueueVelocities()
: CollectionMaster
- enqueueWork()
: Compute
, WorkDistrib
- enqueueWorkA1()
: WorkDistrib
- enqueueWorkA2()
: WorkDistrib
- enqueueWorkA3()
: WorkDistrib
- enqueueWorkB1()
: WorkDistrib
- enqueueWorkB2()
: WorkDistrib
- enqueueWorkB3()
: WorkDistrib
- enqueueWorkC()
: WorkDistrib
- EntryGlob< Elem >
: Entry< Elem >
- Epot
: IMDEnergies
- epsilon
: vdw_val
, go_val
, vdw_params
- epsilon14
: vdw_params
, vdw_val
- epsilon_p
: GBISParamStruct
- epsilon_p_i
: GBISParam< 2 >
- epsilon_s
: GBISParamStruct
- epsilon_s_i
: GBISParam< 2 >
- epsilonRep
: go_val
- error()
: colvarproxy_namd
- error_message
: ParseOptions::DataElement
- Etot
: IMDEnergies
- eval()
: ScriptTcl
- Evdw
: IMDEnergies
- event
: DeviceDataMsg
- Event
: NamdProfileEvent
- event
: DeviceBuffer
- EventsCount
: NamdProfileEvent
- evir
: PmeEvirMsg
, PmePencil< T >
- evir_init()
: PmeXPencil
- ewaldcof
: ComputeNonbondedUtil
- exchange_dst
: HomePatch
- exchange_msg
: HomePatch
- exchange_req
: HomePatch
- exchange_src
: HomePatch
- exchangeAtoms()
: HomePatch
- exchangeCheckpoint()
: HomePatch
- excl
: exclmask
, TileExcl
- ExclAt
: AmberParm7Reader::Ambertoppar
, parm
- exclChecksumIndex
: ComputeNonbondedUtil
- exclContrib
: ComputeNonbondedMIC
- ExclElem()
: ExclElem
, Molecule
, ExclElem
- exclSigIdx
: OutputAtomRecord::integerVals
, BasicAtomInfo
- ExclSigInfo()
: ExclSigInfo
- exclude
: SimParameters
- excludeFromPressure
: SimParameters
- Exclusion()
: Exclusion
- ExclusionCheck()
: ExclusionCheck
- ExclusionSignature()
: ExclusionSignature
- execPath
: QMGrpCalcMsg
- ExecuteMigrations()
: LdbCoordinator
- exists()
: ParseOptions
- exit()
: colvarproxy_namd
, BackEnd
- ExitSchedOn()
: BackEnd
- exitScheduler()
: Node
- exp_a
: go_val
- exp_b
: go_val
- exp_dE_ByRT
: Controller
- exp_rep
: go_val
- EXPDTA
: PDBData
- ExpectMigrate()
: LdbCoordinator
- extCoordFilename
: SimParameters
- extendPtrs()
: ComputeMap
- extent()
: msm::IndexRange
- ExtForce()
: ExtForce
- extForceFilename
: SimParameters
- extForcesCommand
: SimParameters
- extForcesOn
: SimParameters
- extraBondsCosAngles
: SimParameters
- extraBondsCosAnglesSetByUser
: SimParameters
- extraBondsOn
: SimParameters
- extract()
: msm::GridFixed< T, N >
, msm::Grid< T >