Computational Biophysics Workshop - Jülich, August 15-19, 2016
Program
Mon, 15 August: Introduction to VMD and NAMD
08:30-09:00 Registration09:00-09:10 Opening Remarks
09:10-10:40 Introduction to VMD and NAMD, Till Rudack
Coffee Break
11:00-12:00 Introduction to MDFF, Ryan McGreevy
12:00-12:20 Q & A
Lunch Break
14:00-15:00 Experimental lecture: Friedrich Foerster
15:00-16:30 QwikMD Tutorial; VMD Tutorial; NAMD Tutorial
Coffee Break
16:45-18:00 QwikMD Tutorial; VMD Tutorial; NAMD Tutorial; MDFF Tutorial
Dinner
Tue, 16 August: Principles and Applications of Molecular Dynamics Flexible Fitting
09:00-10:00 Using MDFF: examples from modern research, Till RudackCoffee Break
10:50-12:00 Introduction to xMDFF, Ryan McGreevy
12:00-12:20 Q & A
Lunch Break
14:00-15:00 Experimental lecture: Holger Stark
15:00-16:30 MDFF Tutorial; NAMD Tutorial; ModelMaker Tutorial
Coffee Break
16:45-18:00 MDFF Tutorial; ModelMaker Tutorial
Dinner
Wed 17 August 2015: Structural Modeling Using DireX and DEN
09:00-10:30 Introduction to DireX I, Gunnar SchroderCoffee Break
10:50-12:00 Introduction to DireX II, Gunnar Schroder
12:00-12:20 Q & A
Lunch Break
14:00-15:00 Experimental lecture: Stefan Raunser
15:00-16:30 Hands-On Tutorial on DireX; Structure Check Tutorial
Coffee Break
16:45-18:00 Hands-On Tutorial on DireX
Dinner
Thu 18 August 2015 Structural Modeling Using DireX and Rosetta
09:00-10:30 Advanced Techniques in DireX, Gunnar SchroderCoffee Break
10:50-12:00 Introduction to Rosetta, Frank DiMaio
12:00-12:20 Q & A
Lunch Break
14:00-16:00 Hands-On Tutorials on DireX
Coffee Break
16:30-18:00 Rosetta Tutorial
Dinner
Fri 19 August 2015 Structural Modeling Using Rosetta
09:00-10:30 Advanced Techniques in Rosetta, Frank DiMaio10:30-10:50 Q & A
Coffee Break
10:50-12:20 Hands-On Tutoral Rosetta
Lunch Break
14:00-16:00 Participant's Own Research Problem
Coffee Break
16:15-18:00 Participant's Own Research Problem
Dinner
