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VMD Plugins (current) Compound Members
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Here is a list of all class members with links to the class documentation for each member:- _ -
- a -
- A
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
 - accession
: molfile_metadata_t
 - add_cylinder
: import_graphics_cb_t
 - add_line
: import_graphics_cb_t
 - add_point
: import_graphics_cb_t
 - add_sphere
: import_graphics_cb_t
 - add_text
: import_graphics_cb_t
 - add_triangle
: import_graphics_cb_t
 - add_trinorm
: import_graphics_cb_t
 - alpha
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
 - altloc
: molfile_atom_t
 - amax
: ccp4_t
 - amber
: cdfdata
 - amean
: ccp4_t
 - amin
: ccp4_t
 - angle
: hoomd_data_t
 - angle_force_const
: qmdata_t
 - AngleAt1
: parm
 - AngleAt2
: parm
 - AngleAt3
: parm
 - AngleHAt1
: parm
 - AngleHAt2
: parm
 - AngleHAt3
: parm
 - AngleHNum
: parm
 - AngleNum
: parm
 - angles
: qmdata_t, psfdata, jshandle, gaussiandata
 - angletype
: hoomd_data_t
 - angletypename
: hoomd_data_t
 - angular_momentum
: qmdata_t, gaussiandata, molfile_qm_basis_t
 - animsteps
: xsf_t
 - application
: amberdata
 - array
: _json_value
 - atom_numberdim
: mmtkdata
 - atom_numberdimid
: mmtkdata
 - atomdim
: amberdata
 - atomdimid
: amberdata
 - atomic_number
: molfile_qm_basis_t
 - atomicnum
: qm_atom_t, basis_atom_t
 - atomicnum_per_basisatom
: qmdata_t, gaussiandata
 - atomicnumber
: molfile_atom_t
 - atomicnumbers
: tprdata
 - atomlist
: xyzdata, xbgfdata, vasp_plugindata_t, tinkerdata, pqrdata, pdbx_data, pdbdata, mol2data, mmcifdata, jshandle, hoomd_data_t, gmxdata, cardata, bgfdata, abinit_plugindata_t
 - atomname
: md_atom
 - atomnameids
: tprdata
 - AtomNames
: parm
 - atomnum
: md_atom
 - AtomRes
: parm
 - atoms
: vtf_data, qmdata_t, pdbxWriter
 - atomsinmol
: tprdata
 - AtomSym
: parm
 - AtomTree
: parm
 - atomtypeids
: tprdata
 - atomtypes
: lammpsdata
 - attr_exists()
: H5File
 - av
: spider_t
 - avg_bytes_per_timestep
: molfile_qm_timestep_metadata, molfile_timestep_metadata
 
- b -
- b
: Vertex
 - B
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
 - babel_i
: pdbdata
 - babel_num
: pdbdata
 - bantot
: abinit_binary_header_t
 - basis
: qmdata_t, gaussiandata, molfile_qm_t, molfile_qm_basis_t
 - basis_set
: qmdata_t, gaussiandata
 - basis_string
: qmdata_t, gaussiandata, molfile_qm_sysinfo_t
 - beta
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
 - bfactor
: molfile_atom_t
 - bintype
: abinit_binary_header_t
 - blockpad
: jshandle
 - blue
: uchar3
 - bond_force_const
: qmdata_t
 - BondAt1
: parm
 - BondAt2
: parm
 - bondfrom
: jshandle
 - bondHash
: pdbxParser
 - BondHAt1
: parm
 - BondHAt2
: parm
 - BondHNum
: parm
 - BondNum
: parm
 - bondorder
: xbgfdata, mol2data, bgfdata
 - bondorders
: jshandle
 - bonds
: qmdata_t, gaussiandata
 - bondsFrom
: pdbxParser
 - bondsTo
: pdbxParser
 - bondto
: jshandle
 - bondtype
: hoomd_data_t
 - bondtypename
: hoomd_data_t
 - boolean
: _json_value
 - Boundary
: parm
 - box
: xsf_t, md_ts, cube_t
 - Box
: parm
 - box_size
: trx_hdr
 - box_size_id
: mmtkdata
 - box_size_lengthdim
: mmtkdata
 - box_size_lengthdimid
: mmtkdata
 - boxdims
: tprdata
 - bucket
: inthash_t, hash_t
 - buffer
: hoomd_data_t
 - bufferCount
: pdbxWriter
 - byteswap
: spider_t
 
- c -
- C
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
 - cartesian
: qm_wavefunction_t
 - carthessian
: qmdata_t, gaussiandata, molfile_qm_hessian_t
 - cell
: xsf_box, vasp_plugindata_t
 - cell_angles_id
: amberdata
 - cell_angles_scalefactor
: amberdata
 - cell_angles_units
: amberdata
 - cell_angular_id
: amberdata
 - cell_lengths_id
: amberdata
 - cell_lengths_scalefactor
: amberdata
 - cell_lengths_units
: amberdata
 - cell_spatial_id
: amberdata
 - cellwarnflag
: dlpolydata
 - chain
: molfile_atom_t
 - chain_auth
: pdbxParser
 - charge
: molfile_atom_t
 - charge_types
: molfile_qm_timestep_t
 - Charges
: parm
 - charges
: tprdata, molfile_qm_timestep_t
 - charmm
: dcdhandle
 - charmmcheq
: psfdata
 - charmmcmap
: psfdata
 - charmmdrude
: psfdata
 - charmmext
: psfdata
 - charmmfmt
: psfdata
 - chi
: GRASSP
 - citype
: qmdata_t
 - clo
: GRASSP
 - close()
: H5File
 - close_file_read
: molfile_plugin_t, import_graphics_plugin_t
 - close_file_write
: molfile_plugin_t
 - close_parm_file()
: ReadPARM
 - cmd
: GRASSP
 - Cn1
: parm
 - Cn2
: parm
 - Cno
: parm
 - code
: RuleName
 - codvsn
: abinit_binary_header_t
 - colors
: GRASSP
 - columnAtIndex()
: Matrix
 - columns
: Matrix
 - comment
: mmtkdata
 - comments
: PlyFile
 - configuration_id
: mmtkdata
 - cons_fputs
: molfile_plugin_t
 - contraction_coeff
: prim_t
 - conventions
: cdfdata
 - conventionversion
: amberdata
 - converged
: gaussiandata
 - coord
: xsf_t, cube_t
 - coord_data
: lammpsdata
 - coord_exponential
: tngdata
 - coord_location
: cardata
 - coordinates
: pdbxWriter
 - coordinates_id
: amberdata
 - coordinates_scalefactor
: amberdata
 - coordinates_units
: amberdata
 - coords
: vtf_data, molfile_timestep_t
 - coords_read
: xbgfdata, mol2data, bgfdata
 - coordsonly
: jsondata_t, moldendata_t
 - count
: rstdata, molfile_qm_timestep_metadata, molfile_timestep_metadata
 - count_external
: PlyProperty
 - count_internal
: PlyProperty
 - count_offset
: PlyProperty
 - counter
: hoomd_data_t
 - cplex
: abinit_binary_header_t
 - crdpos
: cube_t
 - cterms
: psfdata, jshandle
 - cur_col
: json_state
 - cur_line
: json_state
 - curframe
: cdfdata
 - current_file
: pdbdata
 - current_rules
: PlyFile
 - currtag
: hoomd_data_t
 - Cutcap
: parm
 
- d -
- e -
- f -
- f
: md_file, fs4_t, am_t
 - f_size
: trx_hdr
 - fd
: xsf_t, vtk_t, uhbd_t, stl_t, spider_t, situs_t, handle_t, pqrdata, ply_t, plt_t, phi_t, pdbxWriter, pdbdata, pbeq_t, parmdata, namdbinhandle, pmesh_t, gridmap_t, jshandle, grid_t, grd_t, grasp_t, fs4_t, edm_t, dx_t, dsn6_t, dcdhandle, cube_t, ccp4_t, brix_t, biomocca_t, binposhandle, pdbdata
 - fermie
: abinit_binary_header_t
 - ffd
: msms_t
 - fform
: abinit_binary_header_t
 - field
: lammpsdata
 - fieldinit
: lammpsdata
 - file
: xyzdata, xbgfdata, vtf_data, vasp_plugindata_t, tinkerdata, rstdata, qmdata_t, pdbxParser, mol2data, mmcifdata, mdfdata, lammpsdata, gaussiandata, dlpolydata, crddata, cpmddata, cordata, cardata, bgfdata, abinit_plugindata_t
 - file_name
: xyzdata, xsf_t, tinkerdata, lammpsdata, gaussiandata, cube_t, cpmddata
 - file_type
: PlyFile
 - filename
: vasp_plugindata_t, hoomd_data_t, datasource_t, abinit_plugindata_t
 - filename_extension
: molfile_plugin_t, import_graphics_plugin_t
 - filepos_array
: qmdata_t
 - filepos_atoms
: moldendata_t
 - filepos_geomxyz
: moldendata_t
 - filepos_gto
: moldendata_t
 - filepos_mo
: moldendata_t
 - filetype
: datasource_t, abinit_plugindata_t
 - first
: dcdhandle
 - first_frame
: pdbdata
 - first_pass
: json_state
 - fixedcoords
: dcdhandle
 - flag
: GRASSP
 - fmax
: spider_t
 - fmin
: spider_t
 - fmt
: md_file
 - format_specific_data
: qmdata_t
 - fp
: psfdata, PlyFile, lammpsdata, hoomd_data_t
 - framedim
: amberdata
 - framedimid
: amberdata
 - freeind
: dcdhandle
 - from
: xbgfdata, pdbdata, vtf_data, psfdata, pdbdata, parmdata, mol2data, mdfdata, hoomd_data_t, bgfdata
 - ftype
: t_ftupd
 - fvnr
: t_ftupd
 
- g -
- g
: Vertex
 - g_data
: pdbxParser
 - gamma
: xsf_box, vtf_data, spider_t, md_box, cube_box, molfile_timestep_t
 - gbasis
: qmdata_t, gaussiandata
 - geom_array
: jsondata_t
 - geometry
: qmdata_t, gaussiandata, molfile_qm_sysinfo_t
 - get()
: ReadPARM
 - get_attr()
: H5File
 - get_csv_attr()
: H5File
 - get_dataset()
: H5File
 - get_group_listing()
: H5File
 - get_hydrogen_bond()
: ReadPARM
 - get_natoms()
: LMPlugin
 - get_nframe()
: LMPlugin
 - get_parm_atom()
: ReadPARM
 - get_parm_bond()
: ReadPARM
 - get_parm_boxInfo()
: ReadPARM
 - get_parm_natoms()
: ReadPARM
 - get_parm_nbonds()
: ReadPARM
 - get_userblock()
: H5File
 - gItem
: graphics_list
 - gradient
: qm_timestep_t, molfile_qm_timestep_t, molfile_volumetric_readwrite_t
 - graphics
: stl_t, handle_t, ply_t, msms_t, pmesh_t, grasp_t
 - green
: uchar3
 - group_exists()
: H5File
 - guess
: qmdata_t, gaussiandata
 
- h -
- H5Exception()
: H5Exception
 - H5File()
: H5File
 - has_box
: rstdata, amberdata, mmtkdata, crddata
 - has_color
: molfile_volumetric_t
 - has_gradient
: molfile_qm_timestep_metadata, molfile_volumetric_t
 - has_normals
: ply_t
 - has_occup
: qm_wavefunction_t
 - has_occup_per_wavef
: molfile_qm_timestep_metadata
 - has_orben
: qm_wavefunction_t
 - has_orben_per_wavef
: molfile_qm_timestep_metadata
 - has_scalar
: molfile_volumetric_t
 - has_variance
: molfile_volumetric_t
 - has_velocities
: tprdata, tngdata, molfile_timestep_metadata
 - has_vels
: rstdata
 - hashMem
: pdbxParser
 - hastrimesh
: am_t
 - have_basis
: gaussiandata
 - have_cart_basis
: gaussiandata
 - have_cart_hessian
: qmdata_t, gaussiandata
 - have_carthessian
: molfile_qm_metadata_t
 - have_esp
: qm_timestep_t
 - have_fmo
: gmsdata
 - have_int_hessian
: qmdata_t
 - have_internals
: qmdata_t, gaussiandata
 - have_inthessian
: molfile_qm_metadata_t
 - have_lowdin
: qm_timestep_t
 - have_mulliken
: qm_timestep_t, gaussiandata
 - have_normal_modes
: qmdata_t, gaussiandata
 - have_normalmodes
: molfile_qm_metadata_t
 - have_pcgamess
: gmsdata
 - have_sysinfo
: molfile_qm_metadata_t
 - have_wavefunction
: gaussiandata
 - HB12
: parm
 - HB6
: parm
 - hdr
: abinit_plugindata_t
 - headbyt
: spider_t
 - headerbuf
: am_t
 - headform
: abinit_binary_header_t
 - headrec
: spider_t
 - helix
: cardata
 - hess
: molfile_qm_t
 
- i -
- Iac
: parm
 - iangle
: spider_t
 - Iblo
: parm
 - idmap
: lammpsdata
 - idtag
: qm_wavefunction_t
 - idxmap
: pdbdata
 - IfBox
: parm
 - IfCap
: parm
 - iform
: spider_t
 - Ifpert
: parm
 - imag_modes
: qmdata_t, molfile_qm_hessian_t
 - imagecounts
: hoomd_data_t
 - imami
: spider_t
 - imodflags
: ccp4_t
 - imodstamp
: ccp4_t
 - improper
: hoomd_data_t
 - improper_force_const
: qmdata_t
 - impropers
: qmdata_t, psfdata, jshandle, gaussiandata
 - impropertype
: hoomd_data_t
 - impropertypename
: hoomd_data_t
 - index
: list_node
 - info
: qm_wavefunction_t, molfile_qm_wavefunction_t
 - initatoms
: gaussiandata
 - initcell
: gaussiandata
 - insertion
: molfile_atom_t
 - integer
: _json_value
 - intensities
: qmdata_t, gaussiandata, molfile_qm_hessian_t
 - interactionlist
: tprdata
 - internal_coordinates
: qmdata_t, gaussiandata
 - internal_type
: PlyProperty
 - inthessian
: qmdata_t, gaussiandata, molfile_qm_hessian_t
 - intxc
: abinit_binary_header_t
 - inuse
: spider_t
 - invmat
: xsf_t
 - iofoext
: cordata
 - iov_base
: fio_iovec
 - iov_len
: fio_iovec
 - Ipatm
: parm
 - Ipres
: parm
 - Iptres
: parm
 - ir_size
: trx_hdr
 - is_list
: PlyProperty
 - is_restart
: amberdata
 - is_trajectory
: amberdata
 - isBinary
: vtk_t, dx_t
 - isbinary
: am_t
 - islittleendian
: am_t
 - istart
: dcdhandle
 - istwfk
: abinit_binary_header_t
 - ititl
: parm
 - ixc
: abinit_binary_header_t
 
- j -
- k -
- l -
- m -
- m
: fs4_t
 - majv
: hoomd_data_t
 - mask
: inthash_t, hash_t
 - mass
: molfile_atom_t
 - Masses
: parm
 - masses
: tprdata
 - Matrix()
: Matrix
 - max_memory
: json_settings
 - max_opt_steps
: qmdata_t
 - max_props
: PlyPropRules
 - max_shell
: qmdata_t
 - maxatoms
: lammpsdata
 - maxbnum
: pdbdata
 - maxim
: spider_t
 - Mbona
: parm
 - Mbper
: parm
 - mcscf_num_core
: qmdata_t
 - Mdper
: parm
 - mem_alloc
: json_settings
 - mem_free
: json_settings
 - memory
: qmdata_t, gaussiandata, molfile_qm_sysinfo_t
 - meta
: xbgfdata, pdbdata, pdbx_data, pdbdata, jshandle, gmxdata
 - mf
: tprdata, gmxdata
 - Mgper
: parm
 - minor_step_numberdim
: mmtkdata
 - minor_step_numberdimid
: mmtkdata
 - minv
: hoomd_data_t
 - mmtk
: cdfdata
 - model
: jsondata_t
 - mol_data_location
: mdfdata
 - molbnatoms
: tprdata
 - molbnmol
: tprdata
 - molbtype
: tprdata
 - molnames
: tprdata
 - Mphia
: parm
 - mplevel
: qmdata_t
 - Mptra
: parm
 - msg
: LMPException
 - Mtheta
: parm
 - mulliken_charges
: qm_timestep_t, gaussiandata, qm_timestep_t
 - mult
: qm_wavefunction_t
 - multiplicity
: qmdata_t, gaussiandata, molfile_qm_wavefunction_t
 - multiply()
: Matrix
 - mysigma
: hoomd_data_t
 
- n -
- n_frames
: tngdata
 - n_graphics_elems
: pdbxParser
 - namdfmt
: psfdata
 - name
: _json_object_entry, PlyRuleList, PlyOtherProp, PlyElement, PlyProperty, RuleName, basis_atom_t, molfile_atom_t
 - name_length
: _json_object_entry
 - nangles
: qmdata_t, gaussiandata
 - Nat3
: parm
 - Natcap
: parm
 - natom
: abinit_plugindata_t, abinit_binary_header_t
 - Natom
: parm
 - natoms
: xbgfdata, vtf_data, tprdata, tngdata, pqrdata, pdbx_data, pdbxParser, parmdata, cdfdata, mol2data, mdfdata, jshandle, gmxdata, md_ts, md_header, trx_hdr, dcdhandle, bgfdata, pdbdata
 - Natyp
: parm
 - naxis
: qmdata_t
 - nband
: abinit_binary_header_t
 - Nbona
: parm
 - Nbonds
: parm
 - nbonds
: xbgfdata, vtf_data, qmdata_t, psfdata, pdbxParser, pdbdata, parmdata, mol2data, jshandle, gaussiandata, bgfdata
 - Nbonh
: parm
 - Nbper
: parm
 - ncart
: molfile_qm_metadata_t
 - ncid
: cdfdata
 - nclx
: pbeq_t
 - ncly
: pbeq_t
 - nclz
: pbeq_t
 - nconect
: pdbdata
 - ndata
: phi_t, pbeq_t, grd_t
 - ndiheds
: qmdata_t, gaussiandata
 - Ndper
: parm
 - next
: graphics_list, PlyRuleList, list_node, graphics_list, inthash_node_t, hash_node_t
 - next_alloc
: _json_value
 - nfixed
: dcdhandle
 - nframes
: jshandle
 - ngfft
: abinit_binary_header_t
 - Ngper
: parm
 - ngtc
: tprdata
 - Nhparm
: parm
 - nimag
: qmdata_t, gaussiandata, molfile_qm_metadata_t
 - nimag_modes
: gaussiandata
 - nimprops
: qmdata_t, gaussiandata
 - nintcoords
: qmdata_t, gaussiandata, molfile_qm_metadata_t
 - nkpt
: abinit_binary_header_t
 - nlabel
: spider_t
 - nmolblock
: tprdata
 - nmols
: mdfdata
 - nmoltypes
: tprdata
 - Nmxrs
: parm
 - Nnb
: parm
 - normal_modes
: qmdata_t, gaussiandata
 - normalmodes
: molfile_qm_hessian_t
 - npa_charges
: qm_timestep_t
 - Nparm
: parm
 - Nphb
: parm
 - Nphia
: parm
 - Nphih
: parm
 - nproc
: qmdata_t, gaussiandata, molfile_qm_sysinfo_t
 - nprops
: PlyPropRules, PlyOtherProp, PlyElement
 - npsp
: abinit_binary_header_t
 - Nptra
: parm
 - npwarr
: abinit_binary_header_t
 - nr
: tprdata
 - nre
: trx_hdr
 - Nres
: parm
 - nrow
: spider_t
 - nsam
: spider_t
 - nsavc
: dcdhandle
 - nsets
: vtk_t, uhbd_t, spider_t, situs_t, plt_t, phi_t, pbeq_t, gridmap_t, grd_t, fs4_t, edm_t, dx_t, dsn6_t, dcdhandle, cube_t, ccp4_t, brix_t, biomocca_t, avsfield_t, am_t
 - nslice
: spider_t
 - nspden
: abinit_binary_header_t
 - nspinor
: abinit_binary_header_t
 - Nspm
: parm
 - nsppol
: abinit_binary_header_t
 - Nspsol
: parm
 - nstack
: spider_t
 - nstep
: lammpsdata
 - nsym
: abinit_binary_header_t
 - Ntheta
: parm
 - Ntheth
: parm
 - ntriangles
: am_t
 - Nttyp
: parm
 - ntypat
: abinit_binary_header_t
 - Ntype2d
: parm
 - Ntypes
: parm
 - nuc_charge
: molfile_qm_sysinfo_t
 - num
: PlyElement
 - num_basis_atoms
: qmdata_t, gaussiandata, molfile_qm_metadata_t
 - num_basis_funcs
: qmdata_t, gaussiandata, molfile_qm_metadata_t
 - num_charge_sets
: molfile_qm_timestep_metadata
 - num_coeffs
: qm_wavefunction_t
 - num_comments
: PlyFile
 - num_electrons
: qmdata_t, gaussiandata, molfile_qm_sysinfo_t
 - num_elem_types
: PlyFile
 - num_elems
: PlyOtherElems
 - num_frames
: qmdata_t, gaussiandata
 - num_frames_read
: qmdata_t, gaussiandata
 - num_frames_sent
: qmdata_t, gaussiandata
 - num_obj_info
: PlyFile
 - num_occupied_A
: qmdata_t, molfile_qm_sysinfo_t
 - num_occupied_B
: qmdata_t, molfile_qm_sysinfo_t
 - num_orbitals
: gaussiandata, qm_timestep_t, qm_wavefunction_t
 - num_orbitals_per_wavef
: molfile_qm_timestep_metadata
 - num_prim_per_shell
: qmdata_t, gaussiandata, molfile_qm_basis_t
 - num_scfiter
: qm_timestep_t, molfile_qm_timestep_metadata
 - num_shells
: qmdata_t, gaussiandata, molfile_qm_metadata_t
 - num_shells_per_atom
: qmdata_t, gaussiandata, molfile_qm_basis_t
 - num_wavef
: molfile_qm_timestep_metadata
 - Numang
: parm
 - numangles
: psfdata, jshandle, hoomd_data_t
 - numangletypes
: hoomd_data_t
 - numatoms
: xyzdata, xsf_t, vasp_plugindata_t, tinkerdata, rstdata, qmdata_t, psfdata, pdbxWriter, namdbinhandle, mmcifdata, lammpsdata, hoomd_data_t, gaussiandata, dlpolydata, cube_t, crddata, cpmddata, cordata, cardata, binposhandle
 - Numbnd
: parm
 - numbonds
: hoomd_data_t
 - numbondtypes
: hoomd_data_t
 - numcterms
: psfdata, jshandle
 - numdihedrals
: psfdata, jshandle, hoomd_data_t
 - numdihedraltypes
: hoomd_data_t
 - numdims
: hoomd_data_t
 - Numextra
: parm
 - numfields
: lammpsdata
 - numframe
: hoomd_data_t
 - numimpropers
: psfdata, jshandle, hoomd_data_t
 - numimpropertypes
: hoomd_data_t
 - numprims
: shell_t
 - numshells
: basis_atom_t
 - numsteps
: xsf_t
 - numtypes
: hoomd_data_t
 - numvolmeta
: xsf_t
 - numwave
: qm_timestep_t
 - nversion
: ccp4_t
 - nvert
: GRASSP
 - nvertices
: am_t
 - nverts
: Face
 - nvolsets
: xsf_t, vasp_plugindata_t, abinit_plugindata_t
 - nx
: Vertex
 - ny
: Vertex
 - nz
: Vertex
 
- o -
- obj_info
: PlyFile
 - object
: _json_value
 - object_mem
: _json_value
 - occ
: abinit_binary_header_t
 - occ_orbitals_A
: gaussiandata
 - occ_orbitals_B
: gaussiandata
 - occopt
: abinit_binary_header_t
 - occupancies
: qm_wavefunction_t, molfile_qm_wavefunction_t
 - occupancy
: molfile_atom_t
 - offset
: PlyProperty, datasource_t
 - open()
: H5File
 - open_file_read
: molfile_plugin_t, import_graphics_plugin_t
 - open_file_write
: molfile_plugin_t
 - open_parm_file()
: ReadPARM
 - open_rdwr()
: H5File
 - opt_status
: gaussiandata
 - opt_tol
: qmdata_t
 - optflags
: xbgfdata, vtf_data, mol2data, jshandle, hoomd_data_t, bgfdata
 - orb_energies
: qm_wavefunction_t
 - orb_indices
: qm_wavefunction_t
 - orb_occupancies
: qm_wavefunction_t
 - orbital_energies
: molfile_qm_wavefunction_t
 - orbital_ids
: molfile_qm_wavefunction_t
 - order
: qmdata_t
 - origin
: xsf_t, cube_t, molfile_volumetric_t
 - original_file
: pdbdata
 - other_data
: OtherElem
 - other_elems
: PlyFile
 - other_list
: PlyOtherElems
 - other_offset
: PlyElement
 - other_props
: Face, Vertex, OtherElem, OtherData
 - other_size
: PlyElement
 
- p -
- q -
- r -
- r
: Vertex
 - radius
: molfile_atom_t
 - range
: GRASSP
 - read_angles
: molfile_plugin_t
 - read_bonds
: LMPlugin, molfile_plugin_t
 - read_data
: import_graphics_plugin_t
 - read_fortran_12I6()
: ReadPARM
 - read_mode
: vtf_data
 - read_molecule_metadata
: molfile_plugin_t
 - read_next_timestep
: molfile_plugin_t
 - read_qm_metadata
: molfile_plugin_t
 - read_qm_rundata
: molfile_plugin_t
 - read_qm_timestep_metadata
: molfile_plugin_t
 - read_rawgraphics
: molfile_plugin_t
 - read_structure
: LMPlugin, molfile_plugin_t
 - read_timestep
: LMPlugin, molfile_plugin_t
 - read_timestep_metadata
: molfile_plugin_t
 - read_timestep_pagealign_size
: molfile_plugin_t
 - read_volumetric_data
: molfile_plugin_t
 - read_volumetric_data_ex
: molfile_plugin_t
 - read_volumetric_metadata
: molfile_plugin_t
 - readcoordinates
: tprdata
 - readparm()
: ReadPARM
 - ReadPARM()
: ReadPARM
 - readTS
: pdbx_data
 - reclen
: spider_t
 - recordmarker
: binary_t
 - red
: uchar3
 - remarklen
: molfile_metadata_t
 - remarks
: molfile_metadata_t
 - Req
: parm
 - reset()
: Timer
 - resid
: md_atom, molfile_atom_t
 - resid_auth
: pdbxParser
 - residm
: abinit_binary_header_t
 - resids
: tprdata
 - resinmol
: tprdata
 - resname
: md_atom, molfile_atom_t
 - ResNames
: parm
 - resnames
: tprdata
 - return_code
: vtf_data
 - return_result
: jsondata_t
 - rev
: md_file
 - reverse
: dcdhandle
 - reverseendian
: jshandle
 - rgb3f
: molfile_volumetric_readwrite_t
 - rgb3u
: molfile_volumetric_readwrite_t
 - Rk
: parm
 - rotmat
: xsf_t, vasp_plugindata_t, cube_t, abinit_plugindata_t
 - rowAtIndex()
: Matrix
 - rows
: Matrix
 - rp
: parmdata
 - rprimd
: abinit_plugindata_t, abinit_binary_header_t
 - rstfile
: rstdata
 - rule_list
: PlyFile, PlyPropRules
 - run
: molfile_qm_t
 - runtitle
: qmdata_t, gaussiandata, molfile_qm_sysinfo_t
 - runtyp
: gaussiandata
 - runtype
: qmdata_t, molfile_qm_sysinfo_t
 
- s -
- s
: fs4_t
 - scalar
: molfile_volumetric_readwrite_t
 - scale
: uhbd_t, spider_t, fs4_t
 - scfenergies
: qm_timestep_t, molfile_qm_timestep_t
 - scftyp
: gaussiandata
 - scftyp_string
: gaussiandata
 - scftype
: qmdata_t, molfile_qm_sysinfo_t
 - segid
: molfile_atom_t
 - setidx
: molfile_volumetric_readwrite_t
 - setsread
: dcdhandle
 - settings
: json_settings, json_state
 - shell
: basis_atom_t
 - shell_symmetry
: gaussiandata
 - shell_types
: qmdata_t, molfile_qm_basis_t
 - sig
: spider_t
 - size
: PlyOtherProp, PlyElement, inthash_t, hash_t, molfile_graphics_t
 - skip
: datasource_t
 - so_psp
: abinit_binary_header_t
 - Solty
: parm
 - spatial_id
: amberdata
 - spatialdim
: amberdata
 - spatialdimid
: amberdata
 - spin
: qm_wavefunction_t, molfile_qm_wavefunction_t
 - start
: Timer
 - status
: qmdata_t, molfile_qm_sysinfo_t
 - step
: tngdata, gmxdata, md_ts, trx_hdr
 - step_id
: mmtkdata
 - step_numberdim
: mmtkdata
 - step_numberdimid
: mmtkdata
 - stmbias
: abinit_binary_header_t
 - store_prop
: PlyElement
 - stride
: datasource_t
 - string
: _json_value
 - stringToDouble()
: Matrix
 - style
: molfile_graphics_t
 - swap
: plt_t, pbeq_t, grid_t, grd_t, fs4_t, ccp4_t
 - sym_size
: trx_hdr
 - symafm
: abinit_binary_header_t
 - symbol_array
: jsondata_t
 - symmetry
: shell_t
 - symrel
: abinit_binary_header_t
 - symtab
: tprdata
 - symtablen
: tprdata
 
- t -
- t
: trx_hdr
 - table
: pdbxParser
 - tableSize
: pdbxParser
 - Teq
: parm
 - theta
: spider_t
 - time
: lammpsdata, md_ts
 - time_id
: amberdata, mmtkdata
 - time_per_frame
: tngdata
 - Timer()
: Timer
 - timestep
: vtf_data
 - timestep_mode
: vtf_data
 - timeval
: gmxdata, md_header
 - title
: vtk_t, parm, amberdata, md_header, trx_hdr, abinit_binary_header_t, molfile_metadata_t
 - titleline
: vasp_plugindata_t
 - Tk
: parm
 - tng_traj
: tngdata
 - tnons
: abinit_binary_header_t
 - to
: xbgfdata, vtf_data, psfdata, pdbdata, parmdata, mol2data, mdfdata, hoomd_data_t, bgfdata
 - top_size
: trx_hdr
 - totalcharge
: qmdata_t, gaussiandata, molfile_qm_sysinfo_t
 - toVector()
: Matrix
 - tphysel
: abinit_binary_header_t
 - trajectory_done
: qmdata_t
 - trajectorytype
: mmtkdata
 - TreeJoin
: parm
 - trx
: md_file
 - ts
: hoomd_data_t
 - ts_crd_padsz
: jshandle
 - ts_crd_sz
: jshandle
 - ts_file_offset
: jshandle
 - ts_ucell_padsz
: jshandle
 - ts_ucell_sz
: jshandle
 - tsdelta
: jshandle
 - tsmear
: abinit_binary_header_t
 - typat
: abinit_plugindata_t, abinit_binary_header_t
 - type
: shell_t, _json_value, cdfdata, qm_wavefunction_t, qm_atom_t, molfile_graphics_t, molfile_qm_wavefunction_t, molfile_atom_t
 - type_auth
: pdbxParser
 - types
: tprdata
 
- u -
- v -
- v_size
: trx_hdr
 - value
: _json_object_entry, Matrix
 - value_extra
: json_settings
 - values
: _json_value
 - variance
: molfile_volumetric_readwrite_t
 - velocities
: molfile_timestep_t
 - velocities_id
: amberdata
 - verbose
: jshandle
 - version
: vasp_plugindata_t, tprdata, parm, PlyFile, orcadata, trx_hdr, gaussiandata, gmsdata
 - version_string
: qmdata_t, gaussiandata, molfile_qm_sysinfo_t
 - verts
: Face
 - vfd
: msms_t
 - vir_size
: trx_hdr
 - vmdcon_report()
: LMPException
 - vol
: xsf_t, vtk_t, vasp_plugindata_t, uhbd_t, spider_t, situs_t, plt_t, phi_t, pbeq_t, gridmap_t, grid_t, grd_t, fs4_t, edm_t, dx_t, dsn6_t, cube_t, ccp4_t, brix_t, biomocca_t, avsfield_t, am_t, abinit_plugindata_t
 - voxcount
: ccp4_t
 - voxtype
: ccp4_t
 
- w -
- x -
- y -
- z -
- ~ -
Generated on Mon Nov 3 03:11:26 2025 for VMD Plugins (current) by
1.2.14 written by Dimitri van Heesch,
 © 1997-2002