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jshandle Struct Reference

List of all members.

Public Attributes
int	verbose
fio_fd	fd
ptrdiff_t	natoms
int	parsed_structure
char *	path
int	directio_pgsize_queried
int	directio_enabled
fio_fd	directio_fd
int	directio_block_size
void *	directio_ucell_ptr
void *	directio_ucell_blkbuf
fio_size_t	ts_file_offset
fio_size_t	ts_crd_sz
fio_size_t	ts_crd_padsz
fio_size_t	ts_ucell_sz
fio_size_t	ts_ucell_padsz
int	optflags
molfile_atom_t *	atomlist
molfile_metadata_t *	meta
int	nbonds
int *	bondfrom
int *	bondto
float *	bondorders
int	numangles
int *	angles
int	numdihedrals
int *	dihedrals
int	numimpropers
int *	impropers
int	numcterms
int *	cterms
int	nframes
double	tsdelta
int	reverseendian
int	with_unitcell
unsigned char	blockpad [MOLFILE_DIRECTIO_MAX_BLOCK_SIZE]

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Member Data Documentation

int * jshandle::angles

Definition at line 211 of file jsplugin.c. Referenced by close_js_read, close_js_write, read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

molfile_atom_t* jshandle::atomlist

Definition at line 201 of file jsplugin.c.

unsigned char jshandle::blockpad[MOLFILE_DIRECTIO_MAX_BLOCK_SIZE]

Definition at line 224 of file jsplugin.c. Referenced by write_js_timestep.

int* jshandle::bondfrom

Definition at line 206 of file jsplugin.c. Referenced by close_js_read, close_js_write, read_js_bonds, read_js_structure, write_js_bonds, and write_js_structure.

float* jshandle::bondorders

Definition at line 208 of file jsplugin.c. Referenced by close_js_read, close_js_write, read_js_bonds, read_js_structure, write_js_bonds, and write_js_structure.

int* jshandle::bondto

Definition at line 207 of file jsplugin.c. Referenced by close_js_read, close_js_write, read_js_bonds, read_js_structure, write_js_bonds, and write_js_structure.

int * jshandle::cterms

Definition at line 214 of file jsplugin.c. Referenced by close_js_read, close_js_write, read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

int * jshandle::dihedrals

Definition at line 212 of file jsplugin.c. Referenced by close_js_read, close_js_write, read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

int jshandle::directio_block_size

Definition at line 188 of file jsplugin.c. Referenced by js_blockio_check_and_set, js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_structure, read_js_timestep, read_js_timestep_pagealign_size, write_js_structure, and write_js_timestep.

int jshandle::directio_enabled

Definition at line 186 of file jsplugin.c. Referenced by close_js_read, js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_structure, and read_js_timestep.

fio_fd jshandle::directio_fd

Definition at line 187 of file jsplugin.c. Referenced by close_js_read, js_calc_timestep_blocking_info, open_js_read, read_js_structure, read_js_timestep, and read_js_timestep_index_offsets.

int jshandle::directio_pgsize_queried

Definition at line 185 of file jsplugin.c. Referenced by open_js_read, read_js_structure, and read_js_timestep_pagealign_size.

void* jshandle::directio_ucell_blkbuf

Definition at line 190 of file jsplugin.c. Referenced by js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_timestep, and write_js_timestep.

void* jshandle::directio_ucell_ptr

Definition at line 189 of file jsplugin.c. Referenced by close_js_read, close_js_write, js_calc_timestep_blocking_info, open_js_read, and open_js_write.

fio_fd jshandle::fd

Definition at line 175 of file jsplugin.c. Referenced by close_js_read, close_js_write, js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_structure, read_js_timestep, write_js_structure, and write_js_timestep.

int * jshandle::impropers

Definition at line 213 of file jsplugin.c. Referenced by close_js_read, close_js_write, read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

molfile_metadata_t* jshandle::meta

Definition at line 202 of file jsplugin.c.

ptrdiff_t jshandle::natoms

Definition at line 176 of file jsplugin.c. Referenced by js_blockio_check_and_set, js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_structure, read_js_timestep, and write_js_structure.

int jshandle::nbonds

Definition at line 205 of file jsplugin.c. Referenced by read_js_bonds, read_js_structure, write_js_bonds, and write_js_structure.

int jshandle::nframes

Definition at line 218 of file jsplugin.c. Referenced by close_js_write, open_js_read, open_js_write, and write_js_timestep.

int jshandle::numangles

Definition at line 211 of file jsplugin.c. Referenced by read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

int jshandle::numcterms

Definition at line 214 of file jsplugin.c. Referenced by read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

int jshandle::numdihedrals

Definition at line 212 of file jsplugin.c. Referenced by read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

int jshandle::numimpropers

Definition at line 213 of file jsplugin.c. Referenced by read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

int jshandle::optflags

Definition at line 200 of file jsplugin.c. Referenced by js_blockio_check_and_set, open_js_read, read_js_bonds, read_js_structure, read_js_timestep_pagealign_size, write_js_angles, write_js_bonds, write_js_structure, and write_js_timestep.

int jshandle::parsed_structure

Definition at line 181 of file jsplugin.c. Referenced by open_js_read, open_js_write, read_js_structure, read_js_timestep, and read_js_timestep_index_offsets.

char* jshandle::path

Definition at line 182 of file jsplugin.c. Referenced by close_js_read, open_js_read, and read_js_structure.

int jshandle::reverseendian

Definition at line 220 of file jsplugin.c. Referenced by open_js_read, read_js_structure, and read_js_timestep.

fio_size_t jshandle::ts_crd_padsz

Definition at line 195 of file jsplugin.c. Referenced by js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_timestep, read_js_timestep_index_offsets, and write_js_timestep.

fio_size_t jshandle::ts_crd_sz

Definition at line 194 of file jsplugin.c. Referenced by js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_timestep, and write_js_timestep.

fio_size_t jshandle::ts_file_offset

Definition at line 193 of file jsplugin.c. Referenced by js_calc_timestep_blocking_info, open_js_read, open_js_write, and read_js_timestep_index_offsets.

fio_size_t jshandle::ts_ucell_padsz

Definition at line 197 of file jsplugin.c. Referenced by js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_timestep, read_js_timestep_index_offsets, and write_js_timestep.

fio_size_t jshandle::ts_ucell_sz

Definition at line 196 of file jsplugin.c. Referenced by js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_timestep, and write_js_timestep.

double jshandle::tsdelta

Definition at line 219 of file jsplugin.c.

int jshandle::verbose

Definition at line 174 of file jsplugin.c. Referenced by js_calc_timestep_blocking_info, open_js_read, read_js_structure, and write_js_bonds.

int jshandle::with_unitcell

Definition at line 221 of file jsplugin.c. Referenced by open_js_write.

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The documentation for this struct was generated from the following file:

• jsplugin.c

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