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Computational Biophysics Workshop - Atlanta, Nov. 3-7, 2014

PDF versions of the lecture slides will be posted here.

• 11/3: Introduction to Protein Structure and Dynamics - Klaus Schulten
  • Introduction to VMD (PDF)
  • Introduction to NAMD (PDF)
  
  
• 11/4: Free Energy Calculations - Chris Chipot
  • Introduction to Free-energy Calculations (parts 1 and 2) (PDF)
  
  
• 11/5: Force Field Parameterization - Emad Tajkhorshid & James Gumbart
  • Introduction to Topology, Parameters, and Structure Files (PDF)
  • Examples and Applications / Force Field Toolkit (PDF)
  
  
• 11/6: Simulating Membrane Proteins - Emad Tajkhorshid
  • Membrane Simulation with NAMD & Transport in Membrane Channels (PDF)
  
  
• 11/7: Advanced Methods - James Gumbart
  • Introduction to Structural Biology Techniques (PDF)
  • Molecular Dynamics Flexible Fitting (MDFF) (PDF)