From: Abdul Kadir Mukarram (
Date: Tue Nov 04 2014 - 05:29:18 CST

HI Jeff,

Thank you very much for your help. Indeed, I think I did a mistake in
choosing the platform. It has been solved by installing from the source

Thanks again!


On Mon, Nov 3, 2014 at 10:19 PM, Jeff Comer <> wrote:

> Hi,
> It sounds to me like you didn't download the source code. NAMD can be
> downloaded in binary distributions or as source code.
> Jeff
> –––––––––––––––––––––––––––––––––––———————
> Jeffrey Comer, PhD
> Assistant Professor
> Institute of Computational Comparative Medicine
> Nanotechnology Innovation Center of Kansas State
> Kansas State University
> Office: P-213 Mosier Hall
> Phone: 785-532-6311
> On Mon, Nov 3, 2014 at 2:55 AM, Abdul Kadir Mukarram <
>> wrote:
>> Hi everyone,
>> I am new to Molecular Dynamics field and I wanna learn NAMD to run
>> molecular dynamics of certain proteins.
>> I have problems when I am trying to compile NAMD 2.9_Linux-x86_64 under a
>> dual Intel® Xeon® Processor E5405 machine and it's using Scientific Linux.
>> For your information, I am a basic user of Linux, but I am eager to learn
>> more.
>> Fftw, tcl, gcc, g++, and charm++ were all successfully installed. But
>> when I am trying to compile NAMD, I cannot find "Make.charm" file nor the
>> config file under my working directory (the directory of extracted NAMD
>> tar.gz file). I cannot figure out what's wrong with my steps as I followed
>> the tutorial carefully. I've even tried different versions of charm and
>> NAMD file but still it's not working.
>> Anyone can help me?
>> Thank you very much before.
>> Regards,
>> Mukarram

Abdul Kadir Mukarram
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