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Computational Biophysics Workshop - Urbana, Nov. 29 - Dec. 3, 2010

• Mon, 11/29: Introduction to Protein Structure and Dynamics, K. Schulten 
  • Opening Remarks (pdf)
  • Structure and Sequence Analysis with VMD (pdf)
  • Introduction to Molecular Dynamics with NAMD (pdf)
  
  
• Tue, 11/30: Statistical Mechanics of Proteins, K. Schulten 
  • Analysis of Equilibrium and Non-equilibrium Properties of Proteins with NAMD (pdf)
  • Exemplary Applications of VMD / NAMD in Modern Research (pdf)
  
  
• Thu, 12/2: Parameters for Classical Force Fields, E. Tajkhorshid
  • Introduction to Topology, Parameters, and Structure Files (pdf)
  • Examples and Applications (pdf)
  
  
• Fri, 12/3: Simulating Membrane Channels, E. Tajkhorshid
  • Introduction and Examples (pdf)
  • Nanotubes (pdf)