Computational Biophysics Workshop - Urbana, Nov. 8-12, 2004
Lectures
- 11/8: Introduction to Protein Structure
and Dynamics
- Opening Remarks(pdf)
- Welcome to the TCB Group (pdf)
- Molecular Graphics Perspective of Protein
Structure and Function(pdf)
- Molecular Dynamics Methods (pdf)
- 11/9: Introduction to
Bioinformatics
- Sequence and Structure Alignment Algorithms (pdf)
- Evolution
of Protein Structure (pdf)
- Bioinformatics of tRNA synthetase (pdf)
- 11/10: Statistical
Mechanics
of Proteins
- Equilibrium Properties of Proteins, Part1 (pdf), Part2 (pdf)
- Simulated Cooling of Proteins, (pdf)
- Temperature Echoes (pdf)
- Using NAMD (pdf)
- 11/11: Parameters of
Classical Force
Fields
- Introduction and Examples
- Introduction
to Classical Force Fields (pdf)
- Methods of Parametrization
(pdf)
- 11/12: Simulating
Membrane Channels
