Lectures

  • Mon, May 19: Introduction to Protein Structure and Dynamics - Klaus Schulten
    • Structure and Sequence Analysis with VMD (pdf) (video1, video2)
    • Introduction to Molecular Dynamics with NAMD (pdf) (video)

  • Tue, May 20: Statistical Mechanics of Proteins - Klaus Schulten
    • Analysis of Equilibrium and Non-equilibrium Properties of Proteins with NAMD (pdf)
    • Applications of VMD / NAMD in Modern Research (pdf) (video)

  • Wed, May 21: Computational Nano-Bio - Alek Aksimentiev
    • Introduction to Modeling and Simulations of Nucleic Acid Systems (pdf) (video)
    • Modeling the Interface Between Biological and Synthetic Materials (pdf) (video)

  • Thu, May 22: Collective Dynamics of Proteins Using Elastic Network Models - Ivet Bahar, Tim Lezon and Chakra Chennubhotla
    • Elastic Network Models (ENMs) and Collective Motions of Biomolecular Systems using ProDy (pdf) (video)
    • ProDy Overview and Applications (pdf)

  • Fri, May 23: Druggability Simulations and Sequence Evolution Patterns - Ivet Bahar, Indira Shrivastava, and Chakra Chennubhotla
    • Druggability Method (pdf) (video)
    • Comparative Analysis of Sequence Patterns and Structural Dynamics for Families/Ensembles of Proteins (pdf) (video)