From: Rogan Carr (
Date: Wed Jun 02 2010 - 10:15:41 CDT

Hi Bharath,

There is a tutorial for this called "Parameterizing a Novel Residue"
that should teach you exactly what you want to know.


On Jun 2, 2010, at 4:31 AM, Bharath Rajeswaran wrote:

> Hi,
> I am a new NAMD user. I am trying to run an MD simulation of a
> polymer with glucose as monomer. I do not know how to develop the
> topology file for the molecule other than that listed in the
> topology file. I am using CHARMM. I request you to suggest me how to
> develop topology files for molecules not in the topology files.
> Thanks
> Regards
> Bharath.R

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