Tutorial-l Mailing List

From: Katherine Parra (kparra_at_mail.usf.edu)
Date: Mon Oct 06 2008 - 10:35:17 CDT

Hello all!
I am trying to run a simulation imposing harmonic constraints to the center
of mass of some atoms in 18 protein molecules in NAMD, all of them are in
the same pdb file. I am following the user-defined forces in NAMD tutorial
and actually I already ran a simulation using the tcl forces script from the
tutorial but I would like to know if I could slowly take off this forces
from my system, if this is possible, What command should I change from the
original tcl forces script?
Thanks for your attention and your possible help.
Katherine Parra

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