Tutorial-l Mailing List

From: Won-Young Ahn (wahn_at_uiuc.edu)
Date: Tue Nov 07 2006 - 14:20:08 CST

Dear NAMD users,

 

While I was creating a topology for a new residue, I met a problem of
arranging spaces between atoms.

Could someone inform me how many spaces I should put between atoms?

 

An example of BOND table lines were attached below.

 

BOND C1 C2 C1 C20 C1 O2 C1 H17 C2 C3

BOND C2 C14 C2 H18 C3 C21 C3 C22 C3 H19

 

Thanks,

 

Won-Young

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