NAMD Wiki: NamdAtNICS
Kraken Cray XT5 at NICS
NAMD is installed on Kraken with the scripts
/nics/b/home/jphillip/NAMD_scripts/runbatch_2.8
and
/nics/b/home/jphillip/NAMD_scripts/runbatch_2.8_smp
which link to binaries in lustre scratch (compute nodes can't access home directories).
Kraken User Guide: http://www.nics.tennessee.edu/computing-resources/kraken/user-guide
Docs at http://www.nics.tennessee.edu/computing-resources/kraken/compiling
See also NamdOnCrayXT5
KID (Keeneland Initial Delivery) GPU-accelerated cluster at NICS
NAMD is installed with the script
/nics/b/home/jphillip/KID_scripts/runbatch_2.8_cuda
which links to binaries in ~jphillip.
(Note that the KID filesystem is shared with Kraken, hence the KID_scripts directory.)