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Blue Waters job submission scripts for NAMD are available in /u/sciteam/jphillip/NAMD_scripts (note that you will not be able to list the contents of /u/sciteam/jphillip but you can access the NAMD_scripts subdirectory).

The scripts for the "latest" version of NAMD (2.14) are runbatch, runbatch_cuda, runbatch_memopt, and runbatch_memopt_cuda.

The runbatch scripts require three arguments: