- d -
- d_stencil_1d()
: ComputeMsmMgr
- d_stencil_1d_c1hermite()
: ComputeMsmMgr
- data()
: msm::Grid< T >
- DataElement()
: ParseOptions::DataElement
- DataExchanger()
: DataExchanger
- datastream()
: datastream
- deAssign()
: Rebalancer
- decrement()
: ProxyUsage
- decrSTLoad()
: Rebalancer
- dEdaSumBoxClosed()
: Patch
- defined()
: ParseOptions
- del()
: ResizeArray< T >
, SortedArray< Type >
, UniqueSet< Elem >
, UniqueSetRaw< Elem >
- delete_alch_bonded()
: Molecule
- delete_qm_bonded()
: Molecule
- deleteCommands()
: Measure
- deleteMax()
: maxHeap
- deleteMin()
: minHeap
- delta()
: Lattice
- delTmpPatchAtomsList()
: PatchMap
- depositCombinedResultMsg()
: ProxyPatch
- depositCombinedResultRawMsg()
: ProxyPatch
- depositMigration()
: HomePatch
- device_shared_with_pe()
: DeviceCUDA
- DeviceBuffer()
: DeviceBuffer
- DeviceCUDA()
: DeviceCUDA
- DeviceDataMsg()
: DeviceDataMsg
- dHdrPrefixBoxClosed()
: Patch
- diagonal()
: Tensor
- dihedral_params()
: dihedral_params
- DihedralElem()
: DihedralElem
- disposeForces()
: CollectionMaster
, ParallelIOMgr
- disposePositions()
: CollectionMaster
, ParallelIOMgr
- disposeVelocities()
: CollectionMaster
, ParallelIOMgr
- Dist()
: AVector
- distribute()
: MigrateAtomsCombinedMsg
- DistributeForce()
: ARestraint
- distributeHomePatches()
: WorkDistrib
- DistSqr()
: AVector
- do_calc()
: ComputeGridForce
- doAtomMigration()
: HomePatch
- doForce()
: ComputeConsTorque
, ComputeCylindricalBC
, ComputeEField
, ComputeGridForce
, ComputeHomePatch
, ComputeLCPO
, ComputeNonbondedPair
, ComputePatch
, ComputePatchPair
, ComputeRestraints
, ComputeStir
, ComputeSphericalBC
, ComputeNonbondedSelf
, ComputeConsForce
- doGroupSizeCheck()
: HomePatch
- doMarginCheck()
: HomePatch
- done()
: MsmTimer
, MsmProfiler
- done_reading_files()
: Parameters
- done_reading_structure()
: Parameters
- doneCompute()
: ComputeMsmMgr
- doneSaveComputeMap()
: WorkDistrib
- doneUpdateLocalComputes()
: ComputeMgr
- doneVirialContrib()
: ComputeMsmMgr
- doPairlistCheck()
: HomePatch
- doQMWork()
: ComputePme
- dot()
: AVector
, Vector
- downstream()
: PatchMap
- downstreamNeighbors()
: PatchMap
- doWork()
: ComputeHomeTuples< T, S, P >
, ComputePme
, ComputePatchPair
, ComputeEwald
, ComputeGlobal
, CudaComputeNonbonded
, ComputeQM
, ComputeExt
, ComputeFmmSerial
, ComputeMsm
, Compute
, ComputePatch
, ComputeHomePatch
, ComputeLCPO
, ComputeFullDirect
, ComputePmeCUDA
, ComputeSelfTuples< T, S, P >
, ComputeTclBC
, ComputeGBISser
, ComputeMsmSerial
, ComputeNonbondedMIC
, ComputeMoa
, ComputeNonbondedCUDA
- dt()
: colvarproxy_namd
- dummyData()
: dummyData
- dump_tables()
: HashPool< T >