Paper Citing NAMD - Abstract
Sharma, Vivek; Wikstrom, Marten; Kaila, Ville R. I.
Redox-coupled proton transfer in the active site of cytochrome cbb(3)
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS, 1797:1512-1520, AUG 2010
Cytochrome cbb(3) is a distinct member of the superfamily of respiratory heme-copper oxidases, and is responsible for driving the respiratory chain in many pathogenic bacteria. Like the canonical heme-copper oxidases, cytochrome cbb(3) reduces oxygen to water and couples the released energy to pump protons across the bacterial membrane. Homology modeling and recent electron paramagnetic resonance (EPR) studies on wild type and a mutant cbb(3) enzyme [V. Rauhamaki et al. J. Biol. Chem. 284 (2009) 11301-11308] have led us to perform high-level quantum chemical calculations on the active site. These calculations bring molecular insight into the unique hydrogen bonding between the proximal histidine ligand of heme b(3) and a conserved glutamate, and indicate that the catalytic mechanism involves redox-coupled proton transfer between these residues. The calculated spin densities give insight in the difference in EPR spectra for the wild type and a recently studied E383Q-mutant cbb(3)-enzyme. Furthermore, we show that the redox-coupled proton movement in the proximal cavity of cbb(3)-enzymes contributes to the low redox potential of heme b(3), and suggest its potential implications for the high apparent oxygen affinity of these enzymes. (C) 2010 Elsevier B.V. All rights reserved.
