Paper Citing NAMD - Abstract
Arinaminpathy, Yalini; Khurana, Ekta; Engelman, Donald M.; Gerstein, Mark B.
Computational analysis of membrane proteins: the largest class of drug targets
DRUG DISCOVERY TODAY, 14:1130-1135, DEC 2009
Given the key roles of integral membrane proteins as transporters and channels, it is necessary to understand their structures and, hence, mechanisms and regulation at the molecular level. Membrane proteins represent similar to 30% of all proteins of currently sequenced genomes. Paradoxically, however, only similar to 2% of crystal structures deposited in the protein data bank are of membrane proteins, and very few of these are at high resolution (better than 2 angstrom). The great disparity between our understanding of soluble proteins and our understanding of membrane proteins is because of the practical problems of working with membrane proteins - specifically, difficulties in expression, purification and crystallization. Thus, computational modeling has been utilized extensively to make crucial advances in understanding membrane protein structure and function.
