Paper Citing NAMD - Abstract
Tian, Jianhui; Garcia, Angel E.
An Alpha-Helical Peptide in AOT Micelles Prefers to be Localized at the Water/Headgroup Interface
BIOPHYSICAL JOURNAL, 96:L57-L59, MAY 20 2009
A model alpha-helical peptide encapsulated in a reverse micelle is used to study the structure and dynamics of proteins under constrained environments that mimic the membrane-water environment in cells. Molecular dynamics simulations of the self assembly of systems composed of a peptide, sodium bis(2-ethylhexyl) sulfosuccinate (AOT), water, and isooctane show that the peptide prefers to be located at the water/AOT headgroups interface. We explore the effect of the ACT headgroup charge and the peptide charge and find that the peptides migrate to the interface in all cases. These results show that the peptides prefer the constrained hydration environment of the AOT headgroups. The driving force for this configuration is the gain in entropy by released water molecules that otherwise would solvate the protein and surfactant headgroups
