Paper Citing NAMD - Abstract
Vladimirov, Egor; Ivanova, Anela; Roesch, Notker
Effect of solvent polarization on the reorganization energy of electron transfer from molecular dynamics simulations
JOURNAL OF CHEMICAL PHYSICS, 129 Art. No. 194515, NOV 21 2008
The solvent contribution lambda(s) to the reorganization energy of electron transfer can be estimated from averages of the potential energy gaps between neutral-pair and ion-pair states over an ensemble of structures generated from molecular dynamics simulations. Invoking a Marcus-type two-sphere model for charge separation and recombination in an aqueous environment, we explored the effect of a polarizable force field and noted a strong reduction of lambda(s) (by similar to 45%) compared to the corresponding value obtained with a standard nonpolarizable force field. Both types of force fields yield lambda(s) values that in agreement with the Marcus theory, vary strictly linearly with the inverse of the donor-acceptor distance; the corresponding slopes translate into appropriate effective optical dielectric constants, epsilon(infinity)approximate to 1.0 +/- 0.2 for a nonpolarizable and epsilon(infinity)approximate to 1.7 +/- 0.4 for a polarizable force field. The reduction in the solvent reorganization energy due to a polarizable force field translates into a scaling factor that is essentially independent of the donor-acceptor distance. The corresponding effective optical dielectric constant, epsilon(infinity)approximate to 1.80, is in excellent agreement with experiment for water.
