Paper Citing NAMD - Abstract
Caballero, Julio; Zamora, Claudia; Aguayo, Daniel; Yanez, Claudia; Gonzalez-Nilo, Fernando D.
Study of the interaction between progesterone and beta-cyclodextrin by electrochemical techniques and steered molecular dynamics
JOURNAL OF PHYSICAL CHEMISTRY B, 112:10194-10201, AUG 21 2008
The interaction of progesterone with beta-cyclodextrin (beta-CD) was studied by differential pulse polarography. The aim of the present work was to study the effect of beta-CD on the electrochemical behavior of progesterone in aqueous solution and also to analyze the molecular interactions involved in formation of the inclusion complex. The complex with stoichiometry of 1:1 was thermodynamically characterized. In addition, steered molecular dynamics (SMD) was used to investigate the energetic properties of formation of the inclusion complex along four different pathways (reaction coordinates), considering two possible orientations. From multiple trajectories along these pathways, the potentials of mean force for formation of the beta-CD progesterone inclusion complex were calculated. The energy analysis was in good agreement with the experimental results. In the beta-CD progesterone inclusion complex, a large portion of the steroid skeleton is included in the beta-CD cavity. The lowest energy was found when the D-ring of the guest molecule is located near the secondary hydroxyls of the beta-CD cavity. In the most probable orientation, one intermolecular hydrogen bond is formed between the O of the beta-20 keto group of the progesterone and a secondary hydroxyl of the beta-CD.
