Paper Citing NAMD - Abstract
Seeber, Michele; Cecchini, Marco; Rao, Francesco; Settanni, Giovanni; Caflisch, Amedeo
Wordom: a program for efficient analysis of molecular dynamics simulations
BIOINFORMATICS, 23:2625-2627, OCT 1 2007
Wordom is a versatile program for manipulation of molecular dynamics trajectories and efficient analysis of simulations. Original tools in Wordom include a procedure to evaluate significance of sampling for principal component analysis as well as modules for clustering multiple conformations and evaluation of order parameters for folding and aggregation. The program was developed with special emphasis on user-friendliness, effortless addition of new modules and efficient handling of large sets of trajectories.
