Paper Citing NAMD - Abstract
Neelov, Alexey; Ghasemi, S. Alireza; Goedecker, Stefan
Particle-particle, particle-scaling function algorithm for electrostatic problems in free boundary conditions
JOURNAL OF CHEMICAL PHYSICS, 127 Art. No. 024109, JUL 14 2007
An algorithm for fast calculation of the Coulombic forces and energies of point particles with free boundary conditions is proposed. Its calculation time scales as N log N for N particles. This novel method has lower crossover point with the full O(N-2) direct summation than the fast multipole method. The forces obtained by our algorithm are analytical derivatives of the energy which guarantees energy conservation during a molecular dynamics simulation. Our algorithm is very simple. A version of the code parallelized with the Message Passing Interface can be downloaded under the GNU General Public License from the website of our group. (C) 2007 American Institute of Physics.
