Paper Citing NAMD - Abstract
Jensen, M.O.; Mouritsen, O.G.
Single-channel water permeabilities of Escherichia coli aquaporins AqpZ and GlpF
BIOPHYSICAL JOURNAL, 90:2270-2284, APR 2006
From equilibrium molecular dynamics simulations we have determined single-channel water permeabilities for Escherichia coli aquaporin Z (AqpZ) and aquaglyceroporin GlpF with the channels embedded in lipid bilayers. GlpF's osmotic water permeability constant p(f) exceeds by 2-3 times that of AqpZ and the diffusive permeability constant (p(d)) of GlpF is found to exceed that of AqpZ 2-9-fold. Achieving complete water selectivity in AqpZ consequently implies lower transport rates overall relative to the less selective, wider channel of GlpF. For AqpZ, the ratio p(f)/p(d) congruent to 12 is close to the average number of water molecules in the channel lumen, whereas for GlpF, p(f\)/p(d). congruent to 4. This implies that single-file structure of the luminal water is more pronounced for AqpZ, the narrower channel of the two. Electrostatics profiles across the pore lumens reveal that AqpZ significantly reinforces water-channel interactions, and weaker water-water interactions in turn suppress water-water correlations relative to GlpF. Consequently, suppressed water-water correlations across the narrow selectivity filter become a key structural determinant for water permeation causing luminal water to permeate slower across AqpZ.
