- r -
- rattleN()
: Settle.C
, Settle.h
- rattlePair()
: Settle.h
, Settle.C
- rattlePair< 1 >()
: Settle.C
- read_binary_coors()
: NamdState.C
, ScriptTcl.C
, NamdOneTools.C
, NamdOneTools.h
- read_binary_file()
: NamdOneTools.C
, NamdOneTools.h
- read_CUDA_ARCH()
: DeviceCUDAkernel.cu
- read_CUDA_ARCH_kernel()
: DeviceCUDAkernel.cu
- read_dcdheader()
: dcdlib.h
- read_dcdstep()
: dcdlib.h
- ReadAlpha()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadAlphaNum()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadAValue()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadBound()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadChar()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadDigits()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadInput()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadNextItem()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadNextPmfSpec()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadNextRestraintType()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadParentheses()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadPmfBlock()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadRestraints()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadTaskType()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadTimeUnits()
: FreeEnergyParse.C
, FreeEnergyParse.h
- readtoeoln()
: parm.C
, PDB.C
- ReadWhite()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadWord()
: FreeEnergyParse.C
, FreeEnergyParse.h
- reallocate_device()
: CudaUtils.h
- reallocate_device_T()
: CudaUtils.C
, CudaUtils.h
- reallocate_host()
: CudaUtils.h
- reallocate_host_T()
: CudaUtils.C
, CudaUtils.h
- recursive_bisect_coord()
: WorkDistrib.C
- recursive_bisect_with_curve()
: WorkDistrib.C
- recvAck()
: DataExchanger.C
, DataExchanger.h
- recvBcast()
: DataExchanger.C
- recvCheckpointAck_handler()
: PatchMgr.h
, PatchMgr.C
- recvCheckpointCAck_handler()
: Node.C
- recvCheckpointCReq_handler()
: Node.C
- recvCheckpointLoad_handler()
: PatchMgr.C
, PatchMgr.h
- recvCheckpointReq_handler()
: PatchMgr.C
, PatchMgr.h
- recvCheckpointStore_handler()
: PatchMgr.h
, PatchMgr.C
- recvData()
: DataExchanger.C
, DataExchanger.h
- recvEvalCommand()
: DataExchanger.C
- recvEvalResult()
: DataExchanger.C
- recvExchangeMsg_handler()
: PatchMgr.C
, PatchMgr.h
- recvExchangeReq_handler()
: PatchMgr.h
, PatchMgr.C
- recvRed()
: DataExchanger.C
- recvReplicaDcdAck()
: DataExchanger.C
, DataExchanger.h
- recvReplicaDcdData()
: DataExchanger.C
, DataExchanger.h
- recvReplicaDcdInit()
: DataExchanger.h
, DataExchanger.C
- reduceBondedBinsKernel()
: ComputeBondedCUDAKernel.cu
- reduceGBISEnergyKernel()
: CudaComputeNonbondedKernel.cu
- reduceNonbondedBinsKernel()
: CudaComputeNonbondedKernel.cu
- reduceNonbondedVirialKernel()
: CudaComputeNonbondedKernel.cu
- reduceVariables()
: ComputeNonbondedCUDAKernelBase.h
- reduceVirialEnergyKernel()
: CudaComputeNonbondedKernel.cu
- register_cb()
: ScriptTcl.C
, sortreplicas.c
, PluginIOMgr.C
- register_cuda_compute_pair()
: ComputeNonbondedUtil.h
, ComputeNonbondedCUDA.C
- register_cuda_compute_self()
: ComputeNonbondedUtil.h
, ComputeNonbondedCUDA.C
- register_exit_sched()
: BackEnd.C
- registerUserEventsForAllComputeObjs()
: ComputeMgr.C
, Node.C
- reOrderTileListDepth()
: CudaTileListKernel.cu
- repackTileListsKernel()
: CudaTileListKernel.cu
- replica_barrier()
: DataExchanger.C
, DataExchanger.h
- replica_bcast()
: DataExchanger.h
, DataExchanger.C
- replica_eval()
: DataExchanger.C
, DataExchanger.h
- replica_hash()
: ScriptTcl.C
- replica_min_double()
: DataExchanger.C
, DataExchanger.h
- replica_recv()
: DataExchanger.h
, DataExchanger.C
- replica_send()
: DataExchanger.C
, DataExchanger.h
- replica_sendRecv()
: DataExchanger.h
, DataExchanger.C
- rescale_nonperiodic_cell()
: ComputeMsmSerial.C
- restriction()
: msm_longrng.c
, msm_longrng_sprec.c
- restriction_factored()
: msm_longrng_sprec.c
, msm_longrng.c
- rstring()
: ParseOptions.C