Here is a list of all file members with links to the files they belong to:
- p -
- p_ij_x
: ComputeNonbondedBase2.h
- p_ij_y
: ComputeNonbondedBase2.h
- p_ij_z
: ComputeNonbondedBase2.h
- p_j
: ComputeNonbondedBase.h
, ComputeNonbondedBase2.h
, ComputeNonbondedBase2KNL.h
- PACK
: packmsg.h
, PatchMap.C
- PACK_AND_NEW_ARRAY
: packmsg.h
- PACK_ARRAY
: packmsg.h
- PACK_MEMORY
: packmsg.h
- PACK_MSG()
: ComputeGlobalMsgs.C
, MigrateAtomsMsg.C
, ProxyMgr.C
, packmsg.h
, CollectionMaster.C
, ComputeDPMEMsgs.C
- PACK_RESIZE
: packmsg.h
- PACK_THIS
: packmsg.h
- PACKMSG_CHECKSUM
: packmsg.h
- PACKN
: PatchMap.C
- packSend()
: DataExchanger.C
, DataExchanger.h
- pad()
: dcdlib.C
- PAIR
: ComputeNonbondedBase.h
- pairlist_from_pairlist()
: ComputeNonbondedInl.h
- pairlistFromAll()
: ComputeGBIS.C
- PAIRLISTNAME
: ComputeNonbondedCUDAKernelBase.h
- PAIRS
: GromacsTopFile.C
- paraCharmm
: Parameters.h
- paraXplor
: Parameters.h
- parse
: eabfTcl.C
- PARSE_ANYTHING
: ParseOptions.h
- PARSE_BIGREAL
: ParseOptions.h
- PARSE_BOOL
: ParseOptions.h
- PARSE_FLOAT
: ParseOptions.h
- parse_input_macro
: ParseOptions.C
- parse_input_macro_b
: ParseOptions.C
- parse_input_macro_default
: ParseOptions.C
- parse_input_macro_default_b
: ParseOptions.C
- PARSE_INT
: ParseOptions.h
- PARSE_MULTIPLES
: ParseOptions.h
- PARSE_STRING
: ParseOptions.h
- parse_stringlist_macro
: ParseOptions.C
- PARSE_VECTOR
: ParseOptions.h
- partition()
: SortAtoms.C
- passb()
: pub3dfft.C
- passb2()
: pub3dfft.C
- passb3()
: pub3dfft.C
- passb4()
: pub3dfft.C
- passb5()
: pub3dfft.C
- passf()
: pub3dfft.C
- passf2()
: pub3dfft.C
- passf3()
: pub3dfft.C
- passf4()
: pub3dfft.C
- passf5()
: pub3dfft.C
- patch_pair_num_ptr
: ComputeNonbondedCUDA.C
- PATCH_PAIR_SIZE
: ComputeNonbondedCUDAKernel.h
- patch_pairs
: ComputeNonbondedCUDAKernel.cu
- patch_pairs_ptr
: ComputeNonbondedCUDA.C
- patch_pairs_size
: ComputeNonbondedCUDAKernel.cu
- PATCH_PRIORITY
: Priorities.h
- PATCH_TYPE
: LdbCoordinator.h
- PatchID
: NamdTypes.h
- PatchIDList
: NamdTypes.h
- PatchList
: NamdTypes.h
- PATCHMAP_INL
: PatchMap.inl
- PATCHMAX
: LdbCoordinator.h
- patchNumCount
: CudaComputeNonbondedKernel.cu
- patchPairs
: CudaComputeNonbondedKernel.cu
- PATHSEP
: mainfunc.C
, SimParameters.C
- PATHSEPSTR
: mainfunc.C
, Output.C
, SimParameters.C
- PCMODECUSTOMSEL
: ComputeQM.C
- PCMODEUPDATEPOS
: ComputeQM.C
- PCMODEUPDATESEL
: ComputeQM.C
- pdb_field_str2enum()
: colvarproxy_namd.C
- PDBAtomList
: PDB.h
- PDBAtomPtr
: PDB.h
- pdbData
: Output.C
- PDBVELFACTOR
: common.h
- PDBVELINVFACTOR
: common.h
- PEMOD
: ComputeFullDirect.C
- pencilPMEProcessors
: ComputePme.C
- PERIODIC_ALL
: MsmMacros.h
- PERIODIC_NONE
: MsmMacros.h
- PERIODIC_VEC1
: MsmMacros.h
- PERIODIC_VEC2
: MsmMacros.h
- PERIODIC_VEC3
: MsmMacros.h
- Perm_cX_Y_Z
: PmeSolverUtil.h
- Perm_X_Y_Z
: PmeSolverUtil.h
- Perm_Y_Z_cX
: PmeSolverUtil.h
- Perm_Z_cX_Y
: PmeSolverUtil.h
- pExt_j
: ComputeNonbondedBase2.h
- pFlt_j
: ComputeNonbondedBase2KNL.h
- Phase2_Pair()
: ComputeGBIS.inl
- Phase2_PairSer()
: ComputeGBISser.C
- PhiStencil
: msm_longrng.c
, msm_longrng_sprec.c
- PhiStencilFactored
: msm_longrng_sprec.c
, msm_longrng.c
- PI
: common.h
- plcutoff2
: CudaComputeNonbondedKernel.cu
- plint
: ComputeNonbondedUtil.h
- plist
: ComputeNonbondedCUDAKernel.cu
- plist_size
: ComputeNonbondedCUDAKernel.cu
- Pme2Particle
: ComputeDPMEMsgs.h
- PME_BARRIER
: common.h
- PME_BASE_INL__
: PmeBase.inl
- PME_GRID_PRIORITY
: Priorities.h
- Pme_init()
: ComputePme.C
- PME_MAX_EVALS
: PmeBase.h
- PME_OFFLOAD_PRIORITY
: Priorities.h
- PME_OFFLOAD_UNGRID_PRIORITY
: Priorities.h
- PME_PRIORITY
: Priorities.h
- PME_TRANS2_PRIORITY
: Priorities.h
- PME_TRANS_PRIORITY
: Priorities.h
- PME_UNGRID_PRIORITY
: Priorities.h
- PME_UNTRANS2_PRIORITY
: Priorities.h
- PME_UNTRANS_PRIORITY
: Priorities.h
- PmeReduction
: PmeBase.h
- PmeSlabSendTrans()
: ComputePme.C
- PmeSlabSendUngrid()
: ComputePme.C
- PmeSlabSendUntrans()
: ComputePme.C
- PmeVector
: ComputeDPMEMsgs.h
- PmeXPencilSendUntrans()
: ComputePme.C
- PmeXZPencilFFT()
: ComputePme.C
- PmeYPencilBackwardFFT()
: ComputePme.C
- PmeYPencilForwardFFT()
: ComputePme.C
- PmeYPencilSendTrans()
: ComputePme.C
- PmeYPencilSendUntrans()
: ComputePme.C
- PmeZPencilSendTrans()
: ComputePme.C
- PmeZPencilSendUngrid()
: ComputePme.C
- pmf_t
: FreeEnergyParse.h
- PNPERKCALMOL
: common.h
- PolyDegree
: msm_longrng_sprec.c
, msm_longrng.c
- POP_RANGE
: NamdTypes.h
- PosDistPair
: ComputeQM.C
- Position
: NamdTypes.h
- PositionList
: NamdTypes.h
- positionRescaleFactor2Tag
: Broadcasts.h
- positionRescaleFactorTag
: Broadcasts.h
- POSITIVE
: ParseOptions.h
- pp_clamp()
: PressureProfile.h
- pp_reduction()
: PressureProfile.h
- PPROF
: ComputeNonbondedBase.h
- PPROFFLAG
: ComputeNonbondedPProf.C
- PRAGMA_SIMD
: ComputeNonbondedBase.h
- PRESSUREFACTOR
: common.h
- pRestr
: FreeEnergyRMgr.h
- PRINT_BRACKET
: Controller.C
- PRINT_DOUBLE
: ParseOptions.C
- PRINT_FORCES
: Sequencer.C
- print_Matrix4()
: Matrix4.C
, Matrix4.h
- print_status()
: msm_setup.c
- PRINT_VECTOR()
: ParseOptions.C
- PRIORITY_SIZE
: Priorities.h
- ProblemParsing()
: FreeEnergyParse.h
, FreeEnergyParse.C
- proc_anglegrad()
: TclCommands.C
- proc_dihedralgrad()
: TclCommands.C
- proc_getangle()
: TclCommands.C
- proc_getbond()
: TclCommands.C
- proc_getdihedral()
: TclCommands.C
- processCpuLoad()
: ProxyMgr.C
- PROCESSORMAX
: LdbCoordinator.h
- ProcessorPrivateInit()
: ProcessorPrivate.C
, ProcessorPrivate.h
- procidx
: ProxyMgr.C
- prolongation()
: msm_longrng_sprec.c
, msm_longrng.c
- prolongation_factored()
: msm_longrng_sprec.c
, msm_longrng.c
- PROXY_CORRECTION
: Rebalancer.h
- PROXY_DATA_PRIORITY
: Priorities.h
- PROXY_LOAD
: Rebalancer.C
- PROXY_RESULTS_PRIORITY
: Priorities.h
- PROXYALLMSGBUFFERED
: ProxyPatch.h
- PROXYDATAMSGBUFFERED
: ProxyPatch.h
- PROXYMSGNOTBUFFERED
: ProxyPatch.h
- proxyRecvSpanning
: ProxyMgr.h
, ProxyMgr.C
- proxySendSpanning
: ProxyMgr.C
, ProxyMgr.h
- ProxySet
: ProxyMgr.h
- ProxySetIter
: ProxyMgr.h
- proxySpanDim
: ProxyMgr.C
, ProxyMgr.h
- proxyTreeNodeList
: NamdTypes.h
- psfgen_static_init()
: ScriptTcl.C
- psiSumD
: ComputeNonbondedCUDAKernel.cu
- pubd3di()
: pub3dfft.h
, pub3dfft.C
- pubdz3d()
: pub3dfft.C
, pub3dfft.h
- pubz3d()
: pub3dfft.C
, pub3dfft.h
- pubz3di()
: pub3dfft.C
, pub3dfft.h
- pubzd3d()
: pub3dfft.C
, pub3dfft.h
- PUPbytes()
: Lattice.h
- PUSH_RANGE
: NamdTypes.h