Here is a list of all file members with links to the files they belong to:
- s -
- sampleTableTex()
: ComputeBondedCUDAKernel.cu
, CudaComputeNonbondedKernel.cu
- scalar_sum()
: CudaPmeSolverUtilKernel.h
, CudaPmeSolverUtilKernel.cu
- scalar_sum_kernel()
: CudaPmeSolverUtilKernel.cu
- scale_coordinates()
: PmeBase.inl
- scale_forces()
: PmeBase.inl
- SCALED14
: SimParameters.h
- ScaledPosition
: Lattice.h
- scaling_factors
: ParseOptions.C
- SCRIPT_ATOMRECV
: Broadcasts.h
- SCRIPT_ATOMSEND
: Broadcasts.h
- SCRIPT_ATOMSENDRECV
: Broadcasts.h
- SCRIPT_CHECKPOINT
: Broadcasts.h
- SCRIPT_CHECKPOINT_FREE
: Broadcasts.h
- SCRIPT_CHECKPOINT_LOAD
: Broadcasts.h
- SCRIPT_CHECKPOINT_STORE
: Broadcasts.h
- SCRIPT_CHECKPOINT_SWAP
: Broadcasts.h
- SCRIPT_CONTINUE
: Broadcasts.h
- SCRIPT_DUMMY
: Broadcasts.h
- SCRIPT_END
: Broadcasts.h
- SCRIPT_FORCEOUTPUT
: Broadcasts.h
- SCRIPT_MEASURE
: Broadcasts.h
- SCRIPT_MINIMIZE
: Broadcasts.h
- SCRIPT_OUTPUT
: Broadcasts.h
- SCRIPT_PARSE_BOOL
: SimParameters.C
- SCRIPT_PARSE_FLOAT
: SimParameters.C
- SCRIPT_PARSE_INT
: SimParameters.C
- SCRIPT_PARSE_MOD_FLOAT
: SimParameters.C
- SCRIPT_PARSE_STRING
: SimParameters.C
- SCRIPT_PARSE_VECTOR
: SimParameters.C
- SCRIPT_REINITVELS
: Broadcasts.h
- SCRIPT_RELOADCHARGES
: Broadcasts.h
- SCRIPT_RESCALESOLUTECHARGES
: Broadcasts.h
- SCRIPT_RESCALEVELS
: Broadcasts.h
- SCRIPT_REVERT
: Broadcasts.h
- SCRIPT_RUN
: Broadcasts.h
- scriptBarrierTag
: Broadcasts.h
- seek_dcdfile
: Output.C
- segNamePool
: CompressPsf.C
- SELECT_REALPE
: RefineTorusLB.C
, TorusLB.C
- SELF
: ComputeNonbondedBase.h
- send_build_cuda_force_table()
: ComputeNonbondedCUDA.C
, ComputeNonbondedUtil.C
- send_dgram()
: main.C
- sendReplicaDcdAck()
: DataExchanger.C
, DataExchanger.h
- sendReplicaDcdData()
: DataExchanger.C
, DataExchanger.h
- sendReplicaDcdInit()
: DataExchanger.C
, DataExchanger.h
- SEQ_STK_SZ
: Thread.h
- SET_EXCL
: ComputeNonbondedCUDA.C
, ComputeNonbondedCUDAKernel.cu
, CudaComputeNonbonded.C
- set_macro
: ParseOptions.C
- SET_PRIORITY
: Priorities.h
- SetEqual()
: FreeEnergyVector.C
- setPatchNumLists_findEmptyPatches()
: CudaTileListKernel.cu
- settle1()
: Settle.C
, Settle.h
- settle1_SIMD()
: Settle.C
, Settle.h
- settle1_SIMD< 1 >()
: Settle.C
- settle1_SIMD< 2 >()
: Settle.C
- settle1init()
: Settle.C
, Settle.h
- settle2()
: Settle.C
, Settle.h
- settlev()
: Settle.C
- setup_bin_data()
: msm_shortrng.c
, msm_shortrng_sprec.c
- setup_bins_1away()
: msm_setup.c
- setup_bins_k_away()
: msm_setup.c
- setup_cell_vectors()
: msm_setup.c
- setup_grids()
: msm_setup.c
- setup_hgrid_1d()
: msm_setup.c
- setupSortKey()
: CudaTileListKernel.cu
- SH_BUF_SIZE
: ComputeNonbondedCUDAKernelBase.h
- SHARP
: SimParameters.h
- SHORT
: ComputeNonbondedBase.h
- SHRINK_INNER_BRICK
: TorusLB.C
- shuffleNext()
: CudaComputeGBISKernel.cu
, CudaComputeNonbondedKernel.cu
- SigIndex
: NamdTypes.h
- sigsOfAngles
: CompressPsf.C
- sigsOfBonds
: CompressPsf.C
- sigsOfCrossterms
: CompressPsf.C
- sigsOfDihedrals
: CompressPsf.C
- sigsOfExclusions
: CompressPsf.C
- sigsOfImpropers
: CompressPsf.C
- SIMPARAM()
: DumpBenchParams.h
, DumpBench.C
, DumpBenchParams.h
- simParams
: Output.C
- SIMPARAMSTAG
: common.h
- simple_set_macro
: ParseOptions.C
- sizeof_element()
: packmsg.h
- SKIP
: dumpdcd.c
, fixdcd.c
, flipdcd.c
, loaddcd.c
- SKIPFOUR
: fixdcd.c
, flipdcd.c
, loaddcd.c
, dumpdcd.c
- SKIPN
: PatchMap.C
- slave_init()
: BackEnd.C
- SLOW
: ComputeNonbondedCUDAKernelBase.h
- slow_forces
: ComputeNonbondedCUDAKernel.cu
- slow_tmpforces
: ComputeNonbondedCUDAKernel.cu
- slow_tmpforces_size
: ComputeNonbondedCUDAKernel.cu
- slow_tmpvirials
: ComputeNonbondedCUDAKernel.cu
- slow_tmpvirials_size
: ComputeNonbondedCUDAKernel.cu
- slow_virials
: ComputeNonbondedCUDA.C
, ComputeNonbondedCUDAKernel.cu
- SLOWNAME
: ComputeNonbondedCUDAKernelBase.h
- SLOWONLY
: ComputeNonbondedLES.C
, ComputeNonbondedFEP.C
, ComputeNonbondedGo.C
, ComputeNonbondedLES.C
, ComputeNonbondedPProf.C
, ComputeNonbondedStd.C
, ComputeNonbondedTI.C
, ComputeNonbondedTabEnergies.C
, ComputeNonbondedTI.C
, ComputeNonbondedStd.C
- SLOWONLYNAME
: ComputeNonbondedBase.h
- SMALLRAD
: common.h
- SMALLRAD2
: common.h
- sort
: CudaTileListKernel.cu
- sortAtomsForCUDA()
: SortAtoms.h
, SortAtoms.C
- sortAtomsForPatches()
: SortAtoms.h
, SortAtoms.C
- sortEntries_bubbleSort()
: ComputeNonbondedInl.h
- sortEntries_mergeSort_v1()
: ComputeNonbondedInl.h
- sortEntries_mergeSort_v2()
: ComputeNonbondedInl.h
- sortEntries_selectionSort()
: ComputeNonbondedInl.h
- SortEntry
: NamdTypes.h
- sortop_bitreverse()
: CudaComputeNonbonded.C
, ComputeNonbondedCUDA.C
- SORTTILELISTSKERNEL_ITEMS_PER_THREAD
: CudaTileListKernel.cu
- SORTTILELISTSKERNEL_NUM_THREAD
: CudaTileListKernel.cu
- spatial_hashing()
: msm_shortrng.c
, msm_shortrng_sprec.c
- SPECIAL_PATCH_ID
: Sequencer.C
- split()
: MoleculeQM.C
- SPLIT_C1
: ComputeNonbondedUtil.C
- SPLIT_C2
: ComputeNonbondedUtil.C
- SPLIT_END
: MsmMacros.h
- SPLIT_MARTINI
: ComputeNonbondedUtil.C
- SPLIT_NONE
: ComputeNonbondedUtil.C
- SPLIT_PATCH_HYDROGEN
: SimParameters.h
- SPLIT_PATCH_POSITION
: SimParameters.h
- SPLIT_SHIFT
: ComputeNonbondedUtil.C
- SPLIT_SIGMA2_3
: MsmMacros.h
- SPLIT_SIGMA2_6
: MsmMacros.h
- SPLIT_SIGMA3_5
: MsmMacros.h
- SPLIT_SIGMA4_6
: MsmMacros.h
- SPLIT_SIGMA4_7
: MsmMacros.h
- SPLIT_SIGMA5_8
: MsmMacros.h
- SPLIT_SIGMA5_9
: MsmMacros.h
- SPLIT_SIGMA6_10
: MsmMacros.h
- SPLIT_SIGMA6_11
: MsmMacros.h
- SPLIT_SIGMA6_9
: MsmMacros.h
- SPLIT_SIGMA7_11
: MsmMacros.h
- SPLIT_SIGMA7_12
: MsmMacros.h
- SPLIT_SIGMA7_13
: MsmMacros.h
- SPLIT_SIGMA8_12
: MsmMacros.h
- SPLIT_SIGMA8_13
: MsmMacros.h
- SPLIT_SIGMA8_14
: MsmMacros.h
- SPLIT_SIGMA8_15
: MsmMacros.h
- SPLIT_SWITCH1_2
: MsmMacros.h
- SPLIT_SWITCH3_4
: MsmMacros.h
- SPLIT_SWITCH7_8
: MsmMacros.h
- SPLIT_TAYLOR1
: MsmMacros.h
- SPLIT_TAYLOR2
: MsmMacros.h
- SPLIT_TAYLOR3
: MsmMacros.h
- SPLIT_TAYLOR4
: MsmMacros.h
- SPLIT_TAYLOR5
: MsmMacros.h
- SPLIT_TAYLOR6
: MsmMacros.h
- SPLIT_TAYLOR7
: MsmMacros.h
- SPLIT_TAYLOR8
: MsmMacros.h
- SPLIT_XPLOR
: ComputeNonbondedUtil.C
- SplitName
: msm.c
- SPOLY
: MsmMacros.h
, msm_defn.h
- SPOLY_SPREC
: msm_defn.h
- spread_charge()
: CudaPmeSolverUtilKernel.h
, CudaPmeSolverUtilKernel.cu
- spread_charge_kernel()
: CudaPmeSolverUtilKernel.cu
- SQRT_PI
: ComputeExt.C
, PmeBase.h
- ST_NODE_LOAD
: Rebalancer.C
- start_calc
: ComputeNonbondedCUDA.C
- startupTime
: Node.C
- STATICPARAMSTAG
: common.h
- STDERR_LEVEL
: Debug.h
- STENCIL_1D
: MsmMacros.h
, msm_longrng.c
, msm_longrng_sprec.c
- STEP_BARRIER
: common.h
- stochRescaleCoefficientTag
: Broadcasts.h
- storeForces()
: CudaComputeNonbondedKernel.cu
, ComputeBondedCUDAKernel.cu
- storeInReverse()
: CudaTileListKernel.cu
- Strdup()
: ParseOptions.C
- stream
: ComputeNonbondedCUDA.C
, ComputeNonbondedCUDAKernel.cu
- stream2
: ComputeNonbondedCUDAKernel.cu
, ComputeNonbondedCUDA.C
- STRINGNULL
: common.h
- swap4()
: imd.C
- swap_header()
: imd.C
- SYSTEM
: GromacsTopFile.C