Here is a list of all file members with links to the files they belong to:
- m -
- M_PI
: GoMolecule.C
, Molecule.C
, pub3dfft.C
, PmeBase.h
- MACHINE_PROGRESS
: WorkDistrib.C
- main()
: fixdcd.c
, flipbinpdb.c
, flipdcd.c
, FreeEnergyMain.C
, diffbinpdb.c
, loaddcd.c
, mainfunc.C
, dumpdcd.c
, sortreplicas.c
- MAKE_PAIRLIST
: ComputeNonbondedCUDAKernel.cu
- MAP_FILE
: dumpdcd.c
, fixdcd.c
, flipbinpdb.c
, flipdcd.c
, loaddcd.c
- mapForces
: CudaComputeNonbondedKernel.cu
- mapForcesSlow
: CudaComputeNonbondedKernel.cu
- mapPatchReadyQueue
: CudaComputeNonbondedKernel.cu
- Mass
: ComputeGBIS.inl
, NamdTypes.h
- MASS_EPSILON
: HomePatch.C
- massPool
: CompressPsf.C
- MassToRadius()
: ComputeGBIS.inl
- MassToScreen()
: ComputeGBIS.inl
- master_init()
: BackEnd.C
- masterPeList
: DeviceCUDA.C
- mat_multiply_vec()
: NamdOneTools.C
, NamdOneTools.h
- MatrixFitRMS()
: fitrms.C
, fitrms.h
- MATSWAP
: Matrix4.C
- MAX_ATOMTYPE_CHARS
: Parameters.h
- MAX_CONST_EXCLUSIONS
: ComputeNonbondedCUDAKernel.h
, CudaComputeNonbondedKernel.cu
- MAX_DEBUG_LEVEL
: Debug.h
- MAX_EXCLUSIONS
: ComputeNonbondedCUDAKernel.h
, CudaComputeNonbonded.h
- MAX_GO_CHAINS
: Molecule.h
- max_grid_size
: ComputeNonbondedCUDA.C
, ComputeNonbondedCUDAKernel.cu
- MAX_INTERNODE
: ProxyMgr.C
- MAX_MULTIPLICITY
: Parameters.h
- MAX_NEIGHBORS
: common.h
- MAX_NSTENCIL
: msm_longrng.c
, msm_longrng_sprec.c
- MAX_NUM_DEVICES
: DeviceCUDA.C
- MAX_NUM_RANKS
: DeviceCUDA.C
- MAX_POLY_DEGREE
: msm_longrng.c
, msm_longrng_sprec.c
- MAX_RESTRICTIONS
: Molecule.h
- MAX_SCRIPT_PARAM_SIZE
: Node.h
, SimParameters.C
- MAXHGS
: HomePatch.C
- MAXNEIGHBOUR
: RecBisection.h
- maxPatchDepends
: WorkDistrib.h
- memusage()
: memusage.C
, memusage.h
- memusage_kB()
: memusage.h
- memusage_mallinfo()
: memusage.C
- memusage_MB()
: memusage.h
- memusage_mstats()
: memusage.C
- memusage_proc_self_stat()
: memusage.C
- memusage_ps()
: memusage.C
- memusageinitobject
: memusage.h
- MERGEELECT
: ComputeNonbondedFEP.C
, ComputeNonbondedGo.C
, ComputeNonbondedLES.C
, ComputeNonbondedPProf.C
, ComputeNonbondedStd.C
, ComputeNonbondedTabEnergies.C
, ComputeNonbondedTI.C
- MERGEELECTNAME
: ComputeNonbondedBase.h
- MGRIDFORCEPARAMS_DEFAULTKEY
: MGridforceParams.h
- mic_device_pe()
: ComputeNonbondedMIC.h
- mic_device_shared_with_pe()
: ComputeNonbondedMIC.h
- mic_getargs()
: BackEnd.C
- mic_initialize()
: WorkDistrib.C
- MigrationElem
: Migration.h
- MigrationList
: Migration.h
- MigrationListIter
: Migration.h
- MIN_DEBUG_LEVEL
: GlobalMasterFreeEnergy.C
, ComputeFullDirect.C
, MigrateAtomsMsg.C
, GlobalMasterIMD.C
, GlobalMasterMisc.C
, ComputeDPMTA.C
, GlobalMasterServer.C
, ComputeDPME.C
, GlobalMasterSymmetry.C
, BroadcastMgr.C
, GlobalMasterTcl.C
, GlobalMasterTest.C
, GoMolecule.C
, GridForceGrid.C
, GromacsTopFile.C
, LdbCoordinator.C
, HomePatch.C
, MStream.C
, NamdOneTools.C
, Node.C
, Patch.C
, GlobalMasterTMD.C
, ProxyPatch.C
, ScriptTcl.C
, Sync.C
, GlobalMasterSMD.C
, ComputeHomePatch.C
, Controller.C
, ComputeNonbondedPair.C
, ComputeNonbondedSelf.C
, ComputePatch.C
, ComputeMoa.C
, ComputeGlobalMsgs.C
, Molecule.C
, ProxyMgr.C
, AtomMap.C
, BroadcastClient.C
, WorkDistrib.C
, Compute.C
, ComputeDPMEMsgs.C
, Sequencer.C
, ComputeEwald.C
, ComputeExt.C
, ComputeFmmSerial.C
, ReductionMgr.C
, GlobalMasterEasy.C
, GlobalMaster.C
, ComputeQM.C
, ComputePme.C
, PatchMgr.C
, ComputeMsmSerial.C
, ComputeMgr.C
, ComputeGBISser.C
, ComputeGridForce.C
, MoleculeQM.C
, ComputeHomePatches.C
, ComputeMap.C
, PatchMap.C
, Parameters.C
, ComputePatchPair.C
, Debug.h
- minimizeCoefficientTag
: Broadcasts.h
- MKDIR
: SimParameters.C
, Output.C
- Moa1Grid
: ComputeMoa.h
- Moa3Grid
: ComputeMoa.h
- MODIFIED
: ComputeNonbondedBase.h
- modifiedExclusionForce()
: ComputeBondedCUDAKernel.cu
- modifiedExclusionForcesKernel()
: ComputeBondedCUDAKernel.cu
- MODULO
: PatchMap.inl
- MOLECULE2_C
: Molecule2.C
- MOLECULES
: GromacsTopFile.C
- MOLECULETAG
: common.h
- MOLECULETYPE
: GromacsTopFile.C
- molfile_dcdplugin_fini()
: sortreplicas.c
- molfile_dcdplugin_init()
: sortreplicas.c
- molfile_dcdplugin_register()
: sortreplicas.c
- mollify()
: HomePatch.C
- momentumCorrectionTag
: Broadcasts.h
- MovePatchList
: PatchMgr.h
- MovePatchListIter
: PatchMgr.h
- MOVETO
: Controller.C
- MSM_C1VECTOR_MAX_BLOCK_SIZE
: MsmMap.h
- MSM_C1VECTOR_MAX_BLOCK_VOLUME
: MsmMap.h
- MSM_FIXED_SIZE_GRID_MSG
: ComputeMsm.C
- MSM_FOLD_FACTOR
: ComputeMsm.C
- MSM_GRID_CUTOFF_DECOMP
: ComputeMsm.C
- MSM_MAX_BLOCK_SIZE
: MsmMap.h
- MSM_MAX_BLOCK_VOLUME
: MsmMap.h
- MSM_MIGRATION
: MsmMap.h
- MSM_NODE_MAPPING
: ComputeMsm.C
- MSM_NODE_MAPPING_STATS
: ComputeMsm.C
- MSM_PRIORITY
: Priorities.h
- MSM_PROFILING
: ComputeMsm.C
- MSM_REDUCE_GRID
: ComputeMsm.C
- MSM_SKIP_BEYOND_SPHERE
: ComputeMsm.C
- MSM_SKIP_TOO_DISTANT_BLOCKS
: ComputeMsm.C
- MSM_TIMING
: ComputeMsm.C
- MsmSerialForce
: ComputeMsmSerial.C
- MTSChoices
: SimParameters.h
- MULTIGRATOR_REDUCTION_KINETIC_ENERGY
: ReductionMgr.h
- MULTIGRATOR_REDUCTION_MAX_RESERVED
: ReductionMgr.h
- MultigratorReductionTag
: ReductionMgr.h
- my_assert()
: FreeEnergyAssert.C
- my_imd_connect()
: GlobalMasterIMD.C
- my_sigint_handler()
: Controller.C