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VMD Plugins (current) File Members

_ | a | b | c | d | e | f | g | h | i | j | k | l | m | n | o | p | r | s | t | u | v | w | x

Here is a list of all file members with links to the files they belong to:

- _ -

• _FILE_OFFSET_BITS : largefiles.h
• _LARGEFILE_SOURCE : largefiles.h
• _REAL : ReadPARM7.h, ReadPARM.h

- a -

• adjust_bgf_field_string() : xbgfplugin.C, bgfplugin.C
• adjust_pdb_field_string() : readpdb.h
• alos() : hash.c
• ANGS2_PER_NM2 : Gromacs.h
• ANGS_PER_NM : Gromacs.h
• ANGS_TO_BOHR : gamessplugin.h
• animate_normal_mode() : gamessplugin.h, gamessplugin.c
• ASCII : avsplugin.C
• atom_name_remove_underscores() : netcdfplugin.c
• atom_name_replace() : netcdfplugin.c
• atomic_basis() : gamessplugin.h, gamessplugin.c
• AVSFLOAT : avsplugin.C

- b -

• babel16filetypenames : babelplugin.c
• babel16filetypes : babelplugin.c
• babel16type_from_name() : babelplugin.c
• BABEL_TMPDIR : babelplugin.c
• BINARY : avsplugin.C
• bohr : cubeplugin.C
• BOHR_TO_ANGS : gamessplugin.h

- c -

• calculate_orbital() : gamessplugin.h, gamessplugin.c
• calculate_wavefunction() : gamessplugin.h
• cat : vmdplugin.h
• CCP4HDSIZE : ccp4plugin.C
• CDF_ERR : netcdfplugin.c
• CDF_SUCCESS : netcdfplugin.c
• CDF_TYPE_AMBER : netcdfplugin.c
• CDF_TYPE_MMTK : netcdfplugin.c
• CDF_TYPE_UNKNOWN : netcdfplugin.c
• check_contrl() : gamessplugin.h, gamessplugin.c
• CHECK_FEOF : dcdplugin.c
• CHECK_FREAD : dcdplugin.c
• chop_string_all() : gamessplugin.h, gamessplugin.c
• chop_string_nl() : gamessplugin.h, gamessplugin.c
• ClinComb2() : graspplugin.C
• close_avsfield_read() : avsplugin.C
• close_bgf_read() : xbgfplugin.C, bgfplugin.C
• close_bgf_write() : xbgfplugin.C, bgfplugin.C
• close_biomocca_read() : biomoccaplugin.C
• close_brix_read() : brixplugin.C
• close_car_read() : carplugin.c
• close_ccp4_read() : ccp4plugin.C
• close_cdf_read() : netcdfplugin.c
• close_cor_read() : corplugin.c
• close_cpmd_read() : cpmdplugin.c
• close_crd_read() : crdplugin.c
• close_crd_write() : crdplugin.c
• close_cube_read() : cubeplugin.C
• close_dcd_read() : dcdplugin.c
• close_dlpoly_read() : dlpolyplugin.c
• close_dsn6_read() : dsn6plugin.C
• close_dx_read() : dxplugin.C
• close_dx_write() : dxplugin.C
• close_edm_read() : edmplugin.C
• close_file_read() : stlplugin.C, raster3dplugin.C, namdbinplugin.c, msmsplugin.C, graspplugin.C, dcdplugin.c, binposplugin.c
• close_file_write() : pdbplugin.c, namdbinplugin.c, dcdplugin.c, binposplugin.c
• close_fs4_read() : fs4plugin.C
• close_g96_read() : gromacsplugin.C
• close_gamess_read() : gamessplugin.c
• close_grd_read() : grdplugin.C
• close_grid_read() : gridplugin.C
• close_gro_read() : gromacsplugin.C
• close_js_read() : jsplugin.c
• close_js_write() : jsplugin.c
• close_lammps_read() : lammpsplugin.c
• close_map_read() : mapplugin.C
• close_mdf_read() : mdfplugin.C
• close_mmcif_read() : mmcif.C
• close_mol2_read() : mol2plugin.C
• close_mol2_write() : mol2plugin.C
• close_molden_read() : moldenplugin.c
• close_parm7_file() : ReadPARM7.h
• close_parm7_read() : parm7plugin.C
• close_parm_read() : parmplugin.C
• close_pbeq_read() : pbeqplugin.C
• close_pdb_read() : webpdbplugin.c, pdbplugin.c, babelplugin.c
• close_phi_read() : phiplugin.C
• close_plt_read() : pltplugin.C
• close_pqr_read() : pqrplugin.c
• close_pqr_write() : pqrplugin.c
• close_psf_read() : psfplugin.c
• close_psf_write() : psfplugin.c
• close_rst_read() : rst7plugin.c
• close_rst_write() : rst7plugin.c
• close_situs_read() : situsplugin.C
• close_situs_write() : situsplugin.C
• close_spider_read() : spiderplugin.C
• close_tinker_read() : tinkerplugin.c
• close_trr_read() : gromacsplugin.C
• close_trr_write() : gromacsplugin.C
• close_uhbd_read() : uhbdplugin.C
• close_vaspchgcar_read() : vaspchgcarplugin.c
• close_vaspoutcar_read() : vaspoutcarplugin.c
• close_vaspposcar_read() : vaspposcarplugin.c
• close_vaspposcar_write() : vaspposcarplugin.c
• close_vaspxdatcar_read() : vaspxdatcarplugin.c
• close_vaspxml_read() : vaspxmlplugin.c
• close_xsf_read() : xsfplugin.C
• close_xyz_read() : xyzplugin.c
• close_xyz_write() : xyzplugin.c
• COLOUR : graspplugin.C
• COR_RECORD_LENGTH : corplugin.c
• corgets() : corplugin.c
• count_mdf_bonds() : mdfplugin.C
• crdboxplugin : crdplugin.c
• cube_buildrotmat() : cubeplugin.C
• cube_readbox() : cubeplugin.C
• CURVATURES : graspplugin.C

- d -

• DBLFMT : ReadPARM7.h, ReadPARM.h
• DCD_BADEOF : dcdplugin.c
• DCD_BADFORMAT : dcdplugin.c
• DCD_BADMALLOC : dcdplugin.c
• DCD_BADREAD : dcdplugin.c
• DCD_BADWRITE : dcdplugin.c
• DCD_DNE : dcdplugin.c
• DCD_EOF : dcdplugin.c
• DCD_FILEEXISTS : dcdplugin.c
• DCD_HAS_4DIMS : dcdplugin.c
• DCD_HAS_64BIT_REC : dcdplugin.c
• DCD_HAS_EXTRA_BLOCK : dcdplugin.c
• DCD_IS_CHARMM : dcdplugin.c
• DCD_IS_XPLOR : dcdplugin.c
• DCD_OPENFAILED : dcdplugin.c
• DCD_SUCCESS : dcdplugin.c
• default_atom : vtfplugin.c
• delete_all() : babelplugin.c
• DISTANCES : graspplugin.C
• dlpoly2plugin : dlpolyplugin.c
• dlpoly3plugin : dlpolyplugin.c
• dxgets() : dxplugin.C

- e -

• eatline() : xsfplugin.C, moldenplugin.c, gamessplugin.h, edmplugin.C, cubeplugin.C
• ENERGY : gamessplugin.h
• ERR_FALSE : gamessplugin.c

- f -

• FALSE : gamessplugin.h
• file() : babelplugin.c
• FileDesc : lammpsplugin.c
• filetype : main.c
• find_closing_bracket() : netcdfplugin.c
• find_homo() : gamessplugin.h, gamessplugin.c
• find_item() : lammpsplugin.c
• find_next_item() : lammpsplugin.c
• fio_caddr_t : fastio.h
• fio_fclose() : fastio.h
• fio_fd : fastio.h
• fio_fread() : fastio.h
• fio_fseek() : fastio.h
• fio_ftell() : fastio.h
• fio_fwrite() : fastio.h
• fio_open() : fastio.h
• FIO_READ : fastio.h
• fio_read_int32() : fastio.h
• fio_readv() : fastio.h
• FIO_SEEK_CUR : fastio.h
• FIO_SEEK_END : fastio.h
• FIO_SEEK_SET : fastio.h
• fio_size_t : fastio.h
• FIO_WRITE : fastio.h
• fio_write_int32() : fastio.h
• fio_write_str() : fastio.h
• FIRSTIDX : Gromacs.h
• fortread_4() : fortread.h

- g -

• g96_countatoms() : Gromacs.h
• g96_header() : Gromacs.h
• g96_plugin : gromacsplugin.C
• g96_rec() : Gromacs.h
• g96_timestep() : Gromacs.h
• get_atom_radius() : pqrplugin.c
• get_basis() : gamessplugin.h, gamessplugin.c
• get_bgf_coordinates() : xbgfplugin.C, bgfplugin.C
• get_bgf_fields() : xbgfplugin.C, bgfplugin.C
• get_cart_hessian() : gamessplugin.h, gamessplugin.c
• get_cor_atom() : corplugin.c
• get_gbasis() : gamessplugin.h, gamessplugin.c
• get_guess() : gamessplugin.h, gamessplugin.c
• get_initial_info() : gamessplugin.h, gamessplugin.c
• get_int_coords() : gamessplugin.h, gamessplugin.c
• get_line() : raster3dplugin.C
• get_mdf_bonds() : mdfplugin.C
• get_normal_modes() : gamessplugin.h, gamessplugin.c
• get_num_orbitals() : gamessplugin.h, gamessplugin.c
• get_pdb_conect() : readpdb.h
• get_pdb_coordinates() : readpdb.h
• get_pdb_cryst1() : readpdb.h
• get_pdb_fields() : readpdb.h
• get_pdb_header() : readpdb.h
• get_pqr_coordinates() : pqrplugin.c
• get_pqr_cryst1() : pqrplugin.c
• get_pqr_fields() : pqrplugin.c
• get_proc_mem() : gamessplugin.h, gamessplugin.c
• Get_Property_Values() : graspplugin.C
• get_psf_atom() : psfplugin.c
• get_psf_bonds() : psfplugin.c
• get_pte_idx() : periodic_table.h
• get_pte_idx_from_string() : periodic_table.h
• get_pte_label() : periodic_table.h
• get_pte_mass() : periodic_table.h
• get_pte_vdw_radius() : periodic_table.h
• get_runtitle() : gamessplugin.h, gamessplugin.c
• get_string() : avsplugin.C
• get_system_dimensions() : gamessplugin.h, gamessplugin.c
• get_time() : gamessplugin.h, gamessplugin.c
• get_trajectory() : gamessplugin.h, gamessplugin.c
• get_wavefunction() : gamessplugin.h, gamessplugin.c
• getatomfield() : bgfplugin.C
• getdreiidff() : bgfplugin.C
• GLOBALCOLOR : graspplugin.C
• GRID : gamessplugin.c
• gro_header() : Gromacs.h
• gro_plugin : gromacsplugin.C
• gro_rec() : Gromacs.h
• gro_timestep() : Gromacs.h
• GROMACS_PLUGIN_MAJOR_VERSION : gromacsplugin.C
• GROMACS_PLUGIN_MINOR_VERSION : gromacsplugin.C
• GVB : gamessplugin.h

- h -

• HARTREE_TO_KCAL : gamessplugin.h
• hash() : hash.c
• hash_delete() : hash.h, hash.c
• hash_destroy() : hash.h, hash.c
• HASH_FAIL : hash.h
• hash_init() : hash.h, hash.c
• hash_insert() : hash.h, hash.c
• HASH_LIMIT : hash.c
• hash_lookup() : hash.h, hash.c
• hash_node_t : hash.c
• hash_stats() : hash.h, hash.c
• hash_t : hash.h
• have_gamess() : gamessplugin.h, gamessplugin.c
• have_supported_gbasis() : gamessplugin.h, gamessplugin.c
• HESSIAN : gamessplugin.h
• host_is_little_endian() : Gromacs.h

- i -

• IMPORT_GRAPHICS_LINE_DASHED : import_graphics_plugin.h
• IMPORT_GRAPHICS_LINE_SOLID : import_graphics_plugin.h
• import_graphics_linestyle_t : import_graphics_plugin.h
• IMPORT_GRAPHICS_PLUGIN_TYPE : import_graphics_plugin.h
• initialize_animated_mode() : gamessplugin.h, gamessplugin.c
• IRREGULAR : avsplugin.C
• is_little_endian() : graspplugin.C

- j -

• JSBADFILE : jsplugin.c
• JSBADFORMAT : jsplugin.c
• JSENDIANISM : jsplugin.c
• JSHEADERSTRING : jsplugin.c
• JSMAGICNUMBER : jsplugin.c
• JSMAJORVERSION : jsplugin.c
• JSMINORVERSION : jsplugin.c
• JSNFRAMESOFFSET : jsplugin.c
• JSNOERR : jsplugin.c
• jsplugin : jsplugin.c

- k -

• kw : xsfplugin.C

- l -

• LASTIDX : Gromacs.h
• line3() : graspplugin.C
• LINESIZE : xbgfplugin.C, vaspplugin.h, uhbdplugin.C, spiderplugin.C, phiplugin.C, mol2plugin.C, mdfplugin.C, mapplugin.C, dxplugin.C, carplugin.c, bgfplugin.C, avsplugin.C
• lookup_keyword() : xsfplugin.C

- m -

• M_PI : vaspplugin.h, gromacsplugin.C, fs4plugin.C, dsn6plugin.C, ccp4plugin.C, brixplugin.C
• M_PI_2 : xsfplugin.C, lammpsplugin.c, jsplugin.c, Gromacs.h, dlpolyplugin.c, dcdplugin.c, cubeplugin.C
• main() : main.c
• mapgets() : mapplugin.C
• MAX_G96_LINE : Gromacs.h
• MAX_GRIDPOINTS : gamessplugin.h
• MAX_GRO_LINE : Gromacs.h
• MAX_MDIO_TITLE : Gromacs.h
• MAX_TRX_TITLE : Gromacs.h
• MAXATOMTYPES : vaspplugin.h
• MAXBASISFUNCTIONS : gamessplugin.h
• MAXBONDS : xbgfplugin.C
• MAXQMATOMS : gamessplugin.h
• MCSCF : gamessplugin.h
• MDFMT_G96 : Gromacs.h
• MDFMT_GRO : Gromacs.h
• MDFMT_TRJ : Gromacs.h
• MDFMT_TRR : Gromacs.h
• MDFMT_XTC : Gromacs.h
• MDIO_BADEXTENSION : Gromacs.h
• MDIO_BADFORMAT : Gromacs.h
• MDIO_BADMALLOC : Gromacs.h
• MDIO_BADPARAMS : Gromacs.h
• MDIO_BADPRECISION : Gromacs.h
• MDIO_CANTCLOSE : Gromacs.h
• MDIO_CANTOPEN : Gromacs.h
• mdio_close() : Gromacs.h
• MDIO_EOF : Gromacs.h
• mdio_errcode : Gromacs.h
• mdio_errdescs : Gromacs.h
• mdio_errmsg() : Gromacs.h
• mdio_errno() : Gromacs.h
• mdio_fmtexts : Gromacs.h
• mdio_header() : Gromacs.h
• MDIO_IOERROR : Gromacs.h
• MDIO_MAX_ERRVAL : Gromacs.h
• mdio_open() : Gromacs.h
• MDIO_READ : Gromacs.h
• mdio_readbox() : Gromacs.h
• mdio_readline() : Gromacs.h
• mdio_seterror() : Gromacs.h
• MDIO_SIZEERROR : Gromacs.h
• MDIO_SUCCESS : Gromacs.h
• mdio_timestep() : Gromacs.h
• mdio_tsfree() : Gromacs.h
• MDIO_UNKNOWNERROR : Gromacs.h
• MDIO_UNKNOWNFMT : Gromacs.h
• MDIO_WRITE : Gromacs.h
• MDIO_WRONGFORMAT : Gromacs.h
• MOLFILE_ALTLOC : molfile_plugin.h
• MOLFILE_ATOMICNUMBER : molfile_plugin.h
• MOLFILE_BADOPTIONS : molfile_plugin.h
• MOLFILE_BFACTOR : molfile_plugin.h
• MOLFILE_BONDSSPECIAL : molfile_plugin.h
• MOLFILE_BUFSIZ : molfile_plugin.h
• MOLFILE_CAPCYL : molfile_plugin.h
• MOLFILE_CHARGE : molfile_plugin.h
• MOLFILE_COLOR : molfile_plugin.h
• MOLFILE_CONE : molfile_plugin.h
• MOLFILE_CONVERTER_PLUGIN_TYPE : molfile_plugin.h
• MOLFILE_CYLINDER : molfile_plugin.h
• MOLFILE_EOF : molfile_plugin.h
• MOLFILE_ERROR : molfile_plugin.h
• molfile_graphics_list : stlplugin.C
• molfile_graphics_type : molfile_plugin.h
• MOLFILE_INSERTION : molfile_plugin.h
• MOLFILE_LINE : molfile_plugin.h
• MOLFILE_MASS : molfile_plugin.h
• MOLFILE_NOOPTIONS : molfile_plugin.h
• MOLFILE_NORMS : molfile_plugin.h
• MOLFILE_NOSTRUCTUREDATA : molfile_plugin.h
• MOLFILE_NUMATOMS_NONE : molfile_plugin.h
• MOLFILE_NUMATOMS_UNKNOWN : molfile_plugin.h
• MOLFILE_OCCUPANCY : molfile_plugin.h
• MOLFILE_PLUGIN_TYPE : molfile_plugin.h
• MOLFILE_POINT : molfile_plugin.h
• MOLFILE_RADIUS : molfile_plugin.h
• MOLFILE_SPHERE : molfile_plugin.h
• MOLFILE_SUCCESS : molfile_plugin.h
• MOLFILE_TEXT : molfile_plugin.h
• molfile_timestep_metadata_t : molfile_plugin.h
• MOLFILE_TRIANGLE : molfile_plugin.h
• MOLFILE_TRICOLOR : molfile_plugin.h
• MOLFILE_TRINORM : molfile_plugin.h
• MY_PI : gamessplugin.h
• my_read_pdb_record() : webpdbplugin.c
• myClose : lammpsplugin.c
• myFgets : lammpsplugin.c
• myFopen : lammpsplugin.c
• myRewind : lammpsplugin.c

- n -

• name : xsfplugin.C
• NAMESIZE : mdfplugin.C
• next_elem() : raster3dplugin.C
• NFILE_POS : dcdplugin.c
• NONE : avsplugin.C
• nplugins : babelplugin.c
• nr_pte_entries : periodic_table.h
• NSTEP_POS : dcdplugin.c

- o -

• open_amber_cdf_read() : netcdfplugin.c
• open_avsfield_read() : avsplugin.C
• open_babel_read() : babelplugin.c
• open_bgf_read() : xbgfplugin.C, bgfplugin.C
• open_bgf_write() : xbgfplugin.C, bgfplugin.C
• open_binpos_read() : binposplugin.c
• open_binpos_write() : binposplugin.c
• open_biomocca_read() : biomoccaplugin.C
• open_brix_read() : brixplugin.C
• open_car_read() : carplugin.c
• open_ccp4_read() : ccp4plugin.C
• open_cdf_read() : netcdfplugin.c
• open_cor_file() : corplugin.c
• open_cor_read() : corplugin.c
• open_cpmd_read() : cpmdplugin.c
• open_crd_read() : crdplugin.c
• open_crd_write() : crdplugin.c
• open_cube_read() : cubeplugin.C
• open_dcd_read() : dcdplugin.c
• open_dcd_write() : dcdplugin.c
• open_dlpoly_read() : dlpolyplugin.c
• open_dsn6_read() : dsn6plugin.C
• open_dx_read() : dxplugin.C
• open_dx_write() : dxplugin.C
• open_edm_read() : edmplugin.C
• open_file_read() : webpdbplugin.c, stlplugin.C, raster3dplugin.C, msmsplugin.C, graspplugin.C
• open_file_write() : pdbplugin.c
• open_fs4_read() : fs4plugin.C
• open_g96_read() : gromacsplugin.C
• open_gamess_read() : gamessplugin.c
• open_grd_read() : grdplugin.C
• open_grid_read() : gridplugin.C
• open_gro_read() : gromacsplugin.C
• open_js_read() : jsplugin.c
• open_js_write() : jsplugin.c
• open_lammps_read() : lammpsplugin.c
• open_map_read() : mapplugin.C
• open_mdf_read() : mdfplugin.C
• open_mmcif_read() : mmcif.C
• open_mmcif_write() : mmcif.C
• open_mmtk_cdf_read() : netcdfplugin.c
• open_mol2_read() : mol2plugin.C
• open_mol2_write() : mol2plugin.C
• open_molden_read() : moldenplugin.c
• open_namdbin_read() : namdbinplugin.c
• open_namdbin_write() : namdbinplugin.c
• open_parm7_file() : ReadPARM7.h
• open_parm7_read() : parm7plugin.C
• open_parm_read() : parmplugin.C
• open_pbeq_read() : pbeqplugin.C
• open_pdb_read() : pdbplugin.c, babelplugin.c
• open_phi_read() : phiplugin.C
• open_plt_read() : pltplugin.C
• open_pqr_read() : pqrplugin.c
• open_pqr_write() : pqrplugin.c
• open_psf_read() : psfplugin.c
• open_psf_write() : psfplugin.c
• open_rst_read() : rst7plugin.c
• open_rst_write() : rst7plugin.c
• open_situs_read() : situsplugin.C
• open_situs_write() : situsplugin.C
• open_spider_read() : spiderplugin.C
• open_tinker_read() : tinkerplugin.c
• open_trr_read() : gromacsplugin.C
• open_trr_write() : gromacsplugin.C
• open_uhbd_read() : uhbdplugin.C
• open_vaspchgcar_read() : vaspchgcarplugin.c
• open_vaspoutcar_read() : vaspoutcarplugin.c
• open_vaspposcar_read() : vaspposcarplugin.c
• open_vaspposcar_write() : vaspposcarplugin.c
• open_vaspxdatcar_read() : vaspxdatcarplugin.c
• open_vaspxml_read() : vaspxmlplugin.c
• open_xsf_read() : xsfplugin.C
• open_xyz_read() : xyzplugin.c
• open_xyz_write() : xyzplugin.c
• openbabel11filetypenames : babelplugin.c
• openbabel11filetypes : babelplugin.c
• openbabel11type_from_name() : babelplugin.c
• OPTIMIZE : gamessplugin.h
• orbital_at_grid_xyz() : gamessplugin.h, gamessplugin.c
• orbital_grid_driver() : gamessplugin.h, gamessplugin.c

- p -

• parm7 : ReadPARM7.h
• parmstruct : ReadPARM7.h, ReadPARM.h
• parse_gamess_log_static() : gamessplugin.h, gamessplugin.c
• parse_parm7_atoms() : ReadPARM7.h
• parse_parm7_atype() : ReadPARM7.h
• parse_parm7_bonds() : ReadPARM7.h
• parse_parm7_charge() : ReadPARM7.h
• parse_parm7_mass() : ReadPARM7.h
• parse_parm7_resnames() : ReadPARM7.h
• parse_parm7_respointers() : ReadPARM7.h
• PBC_2D : carplugin.c
• PBC_OFF : carplugin.c
• PBC_ON : carplugin.c
• PDB_ATOM : readpdb.h
• PDB_BUFFER_LENGTH : readpdb.h
• PDB_CONECT : readpdb.h
• PDB_CRYST1 : readpdb.h
• PDB_END : readpdb.h
• PDB_EOF : readpdb.h
• PDB_HEADER : readpdb.h
• pdb_read() : webpdbplugin.c
• PDB_RECORD_LENGTH : readpdb.h
• PDB_REMARK : readpdb.h
• PDB_UNKNOWN : readpdb.h
• PDBBAD : pdbplugin.c
• phigets() : phiplugin.C
• plugin : xyzplugin.c, xsfplugin.C, xbgfplugin.C, webpdbplugin.c, uhbdplugin.C, tinkerplugin.c, stlplugin.C, spiderplugin.C, situsplugin.C, rst7plugin.c, raster3dplugin.C, psfplugin.c, pqrplugin.c, pltplugin.C, phiplugin.C, pdbplugin.c, pbeqplugin.C, parmplugin.C, parm7plugin.C, netcdfplugin.c, namdbinplugin.c, msmsplugin.C, moldenplugin.c, mol2plugin.C, mmcif.C, mdfplugin.C, mapplugin.C, main.c, lammpsplugin.c, gridplugin.C, grdplugin.C, graspplugin.C, gamessplugin.c, fs4plugin.C, edmplugin.C, dxplugin.C, dsn6plugin.C, dcdplugin.c, cubeplugin.C, crdplugin.c, cpmdplugin.c, corplugin.c, ccp4plugin.C, carplugin.c, brixplugin.C, biomoccaplugin.C, binposplugin.c, bgfplugin.C, avsplugin.C
• plugins : babelplugin.c
• POTENTIALS : graspplugin.C
• PQR_ATOM : pqrplugin.c
• PQR_CRYST1 : pqrplugin.c
• PQR_END : pqrplugin.c
• PQR_EOF : pqrplugin.c
• PQR_ERROR : pqrplugin.c
• PQR_RECORD_LENGTH : pqrplugin.c
• PQR_REMARK : pqrplugin.c
• PQR_UNKNOWN : pqrplugin.c
• print_dcderror() : dcdplugin.c
• print_input_data() : gamessplugin.h, gamessplugin.c
• PRINTERR : gamessplugin.c
• PROPERTY_1 : graspplugin.C
• PROPERTY_2 : graspplugin.C
• PSF_RECORD_LENGTH : psfplugin.c
• pte_label : periodic_table.h
• pte_mass : periodic_table.h
• pte_vdw_radius : periodic_table.h
• put_trx_int() : Gromacs.h
• put_trx_real() : Gromacs.h
• put_trx_string() : Gromacs.h

- r -

• rcsbmsg : webpdbplugin.c
• READ : dcdplugin.c
• read_amber_cdf_timestep() : netcdfplugin.c
• read_avsfield_data() : avsplugin.C
• read_avsfield_metadata() : avsplugin.C
• read_bgf_bonds() : xbgfplugin.C, bgfplugin.C
• read_bgf_structure() : xbgfplugin.C, bgfplugin.C
• read_bgf_timestep() : xbgfplugin.C, bgfplugin.C
• read_binary_dx_data() : dxplugin.C
• read_biomocca_data() : biomoccaplugin.C
• read_biomocca_metadata() : biomoccaplugin.C
• read_bonds() : xbgfplugin.C, webpdbplugin.c, psfplugin.c, pdbplugin.c, mol2plugin.C, bgfplugin.C
• read_brix_data() : brixplugin.C
• read_brix_metadata() : brixplugin.C
• read_car_coordinates() : carplugin.c
• read_car_structure() : carplugin.c
• read_car_structure_line() : carplugin.c
• read_car_timestep() : carplugin.c
• read_ccp4_data() : ccp4plugin.C
• read_ccp4_metadata() : ccp4plugin.C
• read_cdf_structure() : netcdfplugin.c
• read_cdf_timestep() : netcdfplugin.c
• read_charmm_4dim() : dcdplugin.c
• read_charmm_extrablock() : dcdplugin.c
• read_cor_structure() : corplugin.c
• read_cor_timestep() : corplugin.c
• read_cpmd_structure() : cpmdplugin.c
• read_cpmd_timestep() : cpmdplugin.c
• read_crd_timestep() : crdplugin.c
• read_cube_data() : cubeplugin.C
• read_cube_metadata() : cubeplugin.C
• read_cube_structure() : cubeplugin.C
• read_cube_timestep() : cubeplugin.C
• read_datasource() : avsplugin.C
• read_dcdheader() : dcdplugin.c
• read_dcdstep() : dcdplugin.c
• read_dlpoly_structure() : dlpolyplugin.c
• read_dlpoly_timestep() : dlpolyplugin.c
• read_dsn6_data() : dsn6plugin.C
• read_dsn6_metadata() : dsn6plugin.C
• read_dx_data() : dxplugin.C
• read_dx_metadata() : dxplugin.C
• read_edm_data() : edmplugin.C
• read_edm_metadata() : edmplugin.C
• read_fixed_atoms() : dcdplugin.c
• read_fs4_data() : fs4plugin.C
• read_fs4_metadata() : fs4plugin.C
• read_g96_structure() : gromacsplugin.C
• read_g96_timestep() : gromacsplugin.C
• read_gamess_structure() : gamessplugin.c
• read_grd_data() : grdplugin.C
• read_grd_metadata() : grdplugin.C
• read_grid_data() : gridplugin.C
• read_grid_metadata() : gridplugin.C
• read_gro_structure() : gromacsplugin.C
• read_gro_timestep() : gromacsplugin.C
• read_js_timestep() : jsplugin.c
• read_lammps_structure() : lammpsplugin.c
• read_lammps_timestep() : lammpsplugin.c
• read_map_data() : mapplugin.C
• read_map_metadata() : mapplugin.C
• read_mdf_bonds() : mdfplugin.C
• read_mdf_structure() : mdfplugin.C
• read_mdf_structure_line() : mdfplugin.C
• read_mmcif_structure() : mmcif.C
• read_mmcif_timestep() : mmcif.C
• read_mmtk_cdf_structure() : netcdfplugin.c
• read_mmtk_cdf_timestep() : netcdfplugin.c
• read_mol2() : mol2plugin.C
• read_mol2_bonds() : mol2plugin.C
• read_mol2_timestep() : mol2plugin.C
• read_molden_structure() : moldenplugin.c
• read_molecule_metadata() : xbgfplugin.C, webpdbplugin.c, pdbplugin.c
• read_next_timestep() : webpdbplugin.c, pdbplugin.c, namdbinplugin.c, moldenplugin.c, gamessplugin.c, dcdplugin.c, binposplugin.c, babelplugin.c
• read_orbital_data() : gamessplugin.c
• read_orbital_metadata() : gamessplugin.c
• read_parm7_bonds() : parm7plugin.C
• read_parm7_flag() : ReadPARM7.h
• read_parm7_header() : ReadPARM7.h
• read_parm7_structure() : parm7plugin.C
• read_parm_bonds() : parmplugin.C
• read_parm_structure() : parmplugin.C
• read_pbeq_data() : pbeqplugin.C
• read_pbeq_metadata() : pbeqplugin.C
• read_pdb_record() : readpdb.h
• read_pdb_structure() : webpdbplugin.c, pdbplugin.c, babelplugin.c
• read_phi_data() : phiplugin.C
• read_phi_metadata() : phiplugin.C
• read_plt_data() : pltplugin.C
• read_plt_metadata() : pltplugin.C
• read_pqr_record() : pqrplugin.c
• read_pqr_structure() : pqrplugin.c
• read_pqr_timestep() : pqrplugin.c
• read_psf() : psfplugin.c
• read_rawgraphics() : stlplugin.C, raster3dplugin.C, msmsplugin.C, graspplugin.C
• read_rst_timestep() : rst7plugin.c
• read_situs_data() : situsplugin.C
• read_situs_metadata() : situsplugin.C
• read_spider_data() : spiderplugin.C
• read_spider_metadata() : spiderplugin.C
• read_tinker_structure() : tinkerplugin.c
• read_tinker_timestep() : tinkerplugin.c
• read_trr_timestep() : gromacsplugin.C
• read_uhbd_data() : uhbdplugin.C
• read_uhbd_metadata() : uhbdplugin.C
• read_vaspchgcar_data() : vaspchgcarplugin.c
• read_vaspchgcar_metadata() : vaspchgcarplugin.c
• read_vaspoutcar_structure() : vaspoutcarplugin.c
• read_vaspoutcar_timestep() : vaspoutcarplugin.c
• read_vaspposcar_structure() : vaspposcarplugin.c
• read_vaspposcar_timestep() : vaspposcarplugin.c
• read_vaspxdatcar_structure() : vaspxdatcarplugin.c
• read_vaspxdatcar_timestep() : vaspxdatcarplugin.c
• read_vaspxml_structure() : vaspxmlplugin.c
• read_vaspxml_timestep() : vaspxmlplugin.c
• read_xsf_data() : xsfplugin.C
• read_xsf_metadata() : xsfplugin.C
• read_xsf_structure() : xsfplugin.C
• read_xsf_timestep() : xsfplugin.C
• read_xyz_structure() : xyzplugin.c
• read_xyz_timestep() : xyzplugin.c
• readtoeoln() : ReadPARM.h
• rebuild_table() : hash.c
• RECSCALE32BIT : dcdplugin.c
• RECSCALE64BIT : dcdplugin.c
• RECSCALEMAX : dcdplugin.c
• RECTILINEAR : avsplugin.C
• register_cb() : main.c
• renorm_coefficient() : gamessplugin.h, gamessplugin.c
• RHF : gamessplugin.h
• ROHF : gamessplugin.h

- s -

• SADPOINT : gamessplugin.h
• set_atom_attributes() : netcdfplugin.c
• Set_Colour() : graspplugin.C
• SHORTWORD : graspplugin.C
• show_msg : webpdbplugin.c
• skip_dcdstep() : dcdplugin.c
• start_psf_bonds() : psfplugin.c
• strip_white() : Gromacs.h
• strip_whitespace() : corplugin.c
• strnwscpy() : fortread.h
• swap2_aligned() : endianswap.h
• swap2_unaligned() : endianswap.h
• swap4_aligned() : endianswap.h
• swap4_unaligned() : endianswap.h
• swap8_aligned() : endianswap.h
• swap8_unaligned() : endianswap.h

- t -

• TOLERANCE : situsplugin.C
• TORF : gamessplugin.c
• TRASH : graspplugin.C
• trj_plugin : gromacsplugin.C
• trr_plugin : gromacsplugin.C
• TRUE : gamessplugin.h
• trx_header() : Gromacs.h
• trx_int() : Gromacs.h
• TRX_MAGIC : Gromacs.h
• trx_real() : Gromacs.h
• trx_rvector() : Gromacs.h
• trx_string() : Gromacs.h
• trx_timestep() : Gromacs.h

- u -

• uhbdgets() : uhbdplugin.C
• UHF : gamessplugin.h
• UNFORMATTED : avsplugin.C
• UNIFORM : avsplugin.C
• USENEWCODE : ReadPARM.h

- v -

• vasp_buildrotmat() : vaspplugin.h
• vasp_plugindata_free() : vaspplugin.h
• vasp_plugindata_malloc() : vaspplugin.h
• vasp_timestep_unitcell() : vaspplugin.h
• vaspchgcarplugin : vaspchgcarplugin.c
• vaspoutcarplugin : vaspoutcarplugin.c
• vaspposcarplugin : vaspposcarplugin.c
• vaspxdatcarplugin : vaspxdatcarplugin.c
• vaspxmlplugin : vaspxmlplugin.c
• vcfplugin : vtfplugin.c
• VECTOR : graspplugin.C
• VERSION_MAJOR : vtfplugin.c
• VERSION_MINOR : vtfplugin.c
• VERTEXCOLOR : graspplugin.C
• vmd_closedir() : vmddir.h
• vmd_delete_file() : babelplugin.c
• vmd_file_is_executable() : vmddir.h
• VMD_FILENAME_MAX : vmddir.h
• vmd_getuid() : babelplugin.c
• vmd_opendir() : vmddir.h
• vmd_readdir() : vmddir.h
• VMDEXTERNSTATIC : hash.h
• VMDPLUGIN : vmdplugin.h
• vmdplugin_ABIVERSION : vmdplugin.h
• VMDPLUGIN_API : vmdplugin.h
• VMDPLUGIN_ERROR : vmdplugin.h
• VMDPLUGIN_EXTERN : vmdplugin.h
• VMDPLUGIN_fini : xyzplugin.c, xsfplugin.C, xbgfplugin.C, webpdbplugin.c, vtfplugin.c, vaspxmlplugin.c, vaspxdatcarplugin.c, vaspposcarplugin.c, vaspoutcarplugin.c, vaspchgcarplugin.c, uhbdplugin.C, tinkerplugin.c, stlplugin.C, spiderplugin.C, situsplugin.C, rst7plugin.c, raster3dplugin.C, psfplugin.c, pqrplugin.c, pltplugin.C, phiplugin.C, pdbplugin.c, pbeqplugin.C, parmplugin.C, parm7plugin.C, netcdfplugin.c, namdbinplugin.c, msmsplugin.C, moldenplugin.c, mol2plugin.C, mmcif.C, mdfplugin.C, mapplugin.C, lammpsplugin.c, jsplugin.c, gromacsplugin.C, gridplugin.C, grdplugin.C, graspplugin.C, gamessplugin.c, fs4plugin.C, edmplugin.C, dxplugin.C, dsn6plugin.C, dlpolyplugin.c, dcdplugin.c, cubeplugin.C, crdplugin.c, cpmdplugin.c, corplugin.c, ccp4plugin.C, carplugin.c, brixplugin.C, biomoccaplugin.C, binposplugin.c, bgfplugin.C, babelplugin.c, avsplugin.C, vmdplugin.h
• vmdplugin_HEAD : vmdplugin.h
• VMDPLUGIN_init : xyzplugin.c, xsfplugin.C, xbgfplugin.C, webpdbplugin.c, vtfplugin.c, vaspxmlplugin.c, vaspxdatcarplugin.c, vaspposcarplugin.c, vaspoutcarplugin.c, vaspchgcarplugin.c, uhbdplugin.C, tinkerplugin.c, stlplugin.C, spiderplugin.C, situsplugin.C, rst7plugin.c, raster3dplugin.C, psfplugin.c, pqrplugin.c, pltplugin.C, phiplugin.C, pdbplugin.c, pbeqplugin.C, parmplugin.C, parm7plugin.C, netcdfplugin.c, namdbinplugin.c, msmsplugin.C, moldenplugin.c, mol2plugin.C, mmcif.C, mdfplugin.C, mapplugin.C, lammpsplugin.c, jsplugin.c, gromacsplugin.C, gridplugin.C, grdplugin.C, graspplugin.C, gamessplugin.c, fs4plugin.C, edmplugin.C, dxplugin.C, dsn6plugin.C, dlpolyplugin.c, dcdplugin.c, cubeplugin.C, crdplugin.c, cpmdplugin.c, corplugin.c, ccp4plugin.C, carplugin.c, brixplugin.C, biomoccaplugin.C, binposplugin.c, bgfplugin.C, babelplugin.c, avsplugin.C, vmdplugin.h
• VMDPLUGIN_register : xyzplugin.c, xsfplugin.C, xbgfplugin.C, webpdbplugin.c, vtfplugin.c, vaspxmlplugin.c, vaspxdatcarplugin.c, vaspposcarplugin.c, vaspoutcarplugin.c, vaspchgcarplugin.c, uhbdplugin.C, tinkerplugin.c, stlplugin.C, spiderplugin.C, situsplugin.C, rst7plugin.c, raster3dplugin.C, psfplugin.c, pqrplugin.c, pltplugin.C, phiplugin.C, pdbplugin.c, pbeqplugin.C, parmplugin.C, parm7plugin.C, netcdfplugin.c, namdbinplugin.c, msmsplugin.C, moldenplugin.c, mol2plugin.C, mmcif.C, mdfplugin.C, mapplugin.C, lammpsplugin.c, jsplugin.c, gromacsplugin.C, gridplugin.C, grdplugin.C, graspplugin.C, gamessplugin.c, fs4plugin.C, edmplugin.C, dxplugin.C, dsn6plugin.C, dlpolyplugin.c, dcdplugin.c, cubeplugin.C, crdplugin.c, cpmdplugin.c, corplugin.c, ccp4plugin.C, carplugin.c, brixplugin.C, biomoccaplugin.C, binposplugin.c, bgfplugin.C, babelplugin.c, avsplugin.C, vmdplugin.h
• vmdplugin_register_cb : vmdplugin.h
• VMDPLUGIN_register_tcl : vmdplugin.h
• VMDPLUGIN_STATIC : mdfplugin.C
• VMDPLUGIN_SUCCESS : vmdplugin.h
• VMDPLUGIN_THREADSAFE : vmdplugin.h
• VMDPLUGIN_THREADUNSAFE : vmdplugin.h
• VMDUSECONECTRECORDS : readpdb.h
• vsfplugin : vtfplugin.c
• vtf_close_file_read() : vtfplugin.c
• vtf_error() : vtfplugin.c
• vtf_getline() : vtfplugin.c
• vtf_lineno : vtfplugin.c
• vtf_open_file_read() : vtfplugin.c
• vtf_parse_atom() : vtfplugin.c
• vtf_parse_bond() : vtfplugin.c
• vtf_parse_pbc() : vtfplugin.c
• vtf_parse_structure() : vtfplugin.c
• vtf_parse_timestep() : vtfplugin.c
• vtf_read_bonds() : vtfplugin.c
• vtf_read_next_timestep() : vtfplugin.c
• vtf_read_structure() : vtfplugin.c
• VTFFILE : vtfplugin.c
• vtfplugin : vtfplugin.c

- w -

• WRITE : dcdplugin.c
• write_bgf_structure() : xbgfplugin.C, bgfplugin.C
• write_bgf_timestep() : xbgfplugin.C, bgfplugin.C
• write_bonds() : xbgfplugin.C, psfplugin.c, mol2plugin.C, bgfplugin.C
• write_crd_timestep() : crdplugin.c
• write_cryst1() : pdbplugin.c
• write_dcdheader() : dcdplugin.c
• write_dcdstep() : dcdplugin.c
• write_dx_data() : dxplugin.C
• write_js_timestep() : jsplugin.c
• write_mol2_structure() : mol2plugin.C
• write_mol2_timestep() : mol2plugin.C
• write_pqr_atom() : pqrplugin.c
• write_pqr_cryst1() : pqrplugin.c
• write_pqr_structure() : pqrplugin.c
• write_pqr_timestep() : pqrplugin.c
• write_psf_structure() : psfplugin.c
• write_raw_pdb_record() : readpdb.h
• write_rst_timestep() : rst7plugin.c
• write_situs_data() : situsplugin.C
• write_structure() : pdbplugin.c
• write_timestep() : pdbplugin.c, namdbinplugin.c, dcdplugin.c, binposplugin.c
• write_trr_timestep() : gromacsplugin.C
• write_vaspposcar_structure() : vaspposcarplugin.c
• write_vaspposcar_timestep() : vaspposcarplugin.c
• write_xyz_structure() : xyzplugin.c
• write_xyz_timestep() : xyzplugin.c

- x -

• xcat : vmdplugin.h
• xsf_aliases : xsfplugin.C
• xsf_ANIMSTEPS : xsfplugin.C
• xsf_ATOMS : xsfplugin.C
• xsf_BAND : xsfplugin.C
• xsf_BEG_2D_BLOCK : xsfplugin.C
• xsf_BEG_2D_DATA : xsfplugin.C
• xsf_BEG_3D_BAND : xsfplugin.C
• xsf_BEG_3D_BLOCK : xsfplugin.C
• xsf_BEG_3D_DATA : xsfplugin.C
• xsf_BEGINFO : xsfplugin.C
• xsf_buildinvmat() : xsfplugin.C
• xsf_buildrotmat() : xsfplugin.C
• xsf_COMMENT : xsfplugin.C
• xsf_CONVCOORD : xsfplugin.C
• xsf_CONVVEC : xsfplugin.C
• xsf_CRYSTAL : xsfplugin.C
• xsf_END_2D_BLOCK : xsfplugin.C
• xsf_END_2D_DATA : xsfplugin.C
• xsf_END_3D_BAND : xsfplugin.C
• xsf_END_3D_BLOCK : xsfplugin.C
• xsf_END_3D_DATA : xsfplugin.C
• xsf_ENDINFO : xsfplugin.C
• xsf_keyword_t : xsfplugin.C
• xsf_MOLECULE : xsfplugin.C
• xsf_NR_KEYWORDS : xsfplugin.C
• xsf_POLYMER : xsfplugin.C
• xsf_PRIMCOORD : xsfplugin.C
• xsf_PRIMVEC : xsfplugin.C
• xsf_read_cell() : xsfplugin.C
• xsf_readbox() : xsfplugin.C
• xsf_SLAB : xsfplugin.C
• xsf_symtab : xsfplugin.C
• xsf_UNKNOWN : xsfplugin.C
• xtc_3dfcoord() : Gromacs.h
• xtc_data() : Gromacs.h
• xtc_float() : Gromacs.h
• xtc_int() : Gromacs.h
• XTC_MAGIC : Gromacs.h
• xtc_magicints : Gromacs.h
• xtc_plugin : gromacsplugin.C
• xtc_receivebits() : Gromacs.h
• xtc_receiveints() : Gromacs.h
• xtc_sizeofint() : Gromacs.h
• xtc_sizeofints() : Gromacs.h
• xtc_timestep() : Gromacs.h

---