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VMD Plugins (current) Compound Members
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Here is a list of all class members with links to the class documentation for each member:- a -
- A
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
- accession
: molfile_metadata_t
- add_cylinder
: import_graphics_cb_t
- add_line
: import_graphics_cb_t
- add_point
: import_graphics_cb_t
- add_sphere
: import_graphics_cb_t
- add_text
: import_graphics_cb_t
- add_triangle
: import_graphics_cb_t
- add_trinorm
: import_graphics_cb_t
- alpha
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
- altloc
: molfile_atom_t
- amber
: cdfdata
- angle_force_const
: gamessdata
- AngleAt1
: parm
- AngleAt2
: parm
- AngleAt3
: parm
- AngleHAt1
: parm
- AngleHAt2
: parm
- AngleHAt3
: parm
- AngleHNum
: parm
- AngleNum
: parm
- angles
: gamessdata
- animated_mode
: gamessdata
- animsteps
: xsf_t
- application
: amberdata
- atom_numberdim
: mmtkdata
- atom_numberdimid
: mmtkdata
- atomdim
: amberdata
- atomdimid
: amberdata
- atomic_number
: gamessdata
- atomic_shells
: gamessdata, molfile_qm_orbital_t
- atomicnumber
: molfile_atom_t
- atomlist
: xyzdata, xbgfdata, vasp_plugindata_t, tinkerdata, pqrdata, pdbdata, moldendata, mol2data, mmcifdata, cardata, bgfdata
- atomname
: md_atom
- AtomNames
: parm
- atomnum
: md_atom
- AtomRes
: parm
- atoms
: vtf_data
- AtomSym
: parm
- AtomTree
: parm
- av
: spider_t
- avg_bytes_per_timestep
: molfile_timestep_metadata
- b -
- B
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
- babel_i
: pdbdata
- babel_num
: pdbdata
- basis
: gamessdata, molfile_qm_orbital_t
- basis_counter
: gamessdata, molfile_qm_orbital_t
- basis_string
: gamessdata, molfile_qm_sysinfo_t
- beta
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
- bfactor
: molfile_atom_t
- bond_force_const
: gamessdata
- BondAt1
: parm
- BondAt2
: parm
- BondHAt1
: parm
- BondHAt2
: parm
- BondHNum
: parm
- BondNum
: parm
- bondorder
: xbgfdata, mol2data, bgfdata
- bonds
: gamessdata
- Boundary
: parm
- box
: xsf_t, md_ts, cube_t
- Box
: parm
- box_size
: trx_hdr
- box_size_id
: mmtkdata
- box_size_lengthdim
: mmtkdata
- box_size_lengthdimid
: mmtkdata
- bucket
: hash_t
- byteswap
: spider_t
- c -
- C
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
- carthessian
: gamessdata, molfile_qm_hessian_t
- cell
: xsf_box, vasp_plugindata_t
- cell_angles_id
: amberdata
- cell_angles_scalefactor
: amberdata
- cell_angles_units
: amberdata
- cell_angular_id
: amberdata
- cell_lengths_id
: amberdata
- cell_lengths_scalefactor
: amberdata
- cell_lengths_units
: amberdata
- cell_spatial_id
: amberdata
- cellwarnflag
: dlpolydata
- chain
: molfile_atom_t
- charge
: gamess_temp, molfile_atom_t
- Charges
: parm
- charmm
: dcdhandle
- charmmcheq
: psfdata
- charmmcmap
: psfdata
- charmmext
: psfdata
- charmmfmt
: psfdata
- chi
: GRASSP
- clo
: GRASSP
- close_file_read
: molfile_plugin_t, import_graphics_plugin_t
- close_file_write
: molfile_plugin_t
- close_parm_file()
: ReadPARM
- cmd
: GRASSP
- Cn1
: parm
- Cn2
: parm
- Cno
: parm
- colors
: GRASSP
- comment
: mmtkdata
- configuration_id
: mmtkdata
- conventions
: cdfdata
- conventionversion
: amberdata
- coord
: xsf_t, cube_t
- coord_location
: cardata
- coordinates_id
: amberdata
- coordinates_scalefactor
: amberdata
- coordinates_units
: amberdata
- coords
: vtf_data, molfile_timestep_t
- coords_read
: xbgfdata, mol2data, bgfdata
- count
: rstdata, molfile_timestep_metadata
- crdpos
: cube_t
- curframe
: cdfdata
- current_file
: pdbdata
- current_mode_frame
: mode_data
- Cutcap
: parm
- d -
- e -
- f -
- f
: md_file, fs4_t
- f_size
: trx_hdr
- fd
: xsf_t, uhbd_t, stl_t, spider_t, situs_t, handle_t, pqrdata, plt_t, phi_t, pdbdata, pbeq_t, parmdata, namdbinhandle, gridmap_t, jshandle, grid_t, grd_t, grasp_t, fs4_t, edm_t, dx_t, dsn6_t, dcdhandle, cube_t, ccp4_t, brix_t, biomocca_t, binposhandle, pdbdata
- ffd
: msms_t
- file
: xyzdata, xbgfdata, vtf_data, vasp_plugindata_t, tinkerdata, rstdata, moldendata, mol2data, mmcifdata, mdfdata, lammpsdata, gamessdata, dlpolydata, crddata, cpmddata, cordata, cardata, bgfdata
- file_name
: xyzdata, xsf_t, tinkerdata, moldendata, lammpsdata, gamessdata, cube_t, cpmddata
- filename
: vasp_plugindata_t, datasource_t
- filename_extension
: molfile_plugin_t, import_graphics_plugin_t
- filetype
: datasource_t
- first
: dcdhandle
- first_frame
: pdbdata
- fixedcoords
: dcdhandle
- flag
: GRASSP
- fmax
: spider_t
- fmin
: spider_t
- fmt
: md_file
- fp
: psfdata
- framedim
: amberdata
- framedimid
: amberdata
- freeind
: dcdhandle
- from
: xbgfdata, pdbdata, vtf_data, psfdata, pdbdata, parmdata, mol2data, mdfdata, bgfdata
- g -
- gamma
: xsf_box, vtf_data, spider_t, md_box, cube_box, molfile_timestep_t
- gbasis
: gamessdata, molfile_qm_sysinfo_t
- geometry
: gamessdata, molfile_qm_sysinfo_t
- get()
: ReadPARM
- get_hydrogen_bond()
: ReadPARM
- get_parm_atom()
: ReadPARM
- get_parm_bond()
: ReadPARM
- get_parm_boxInfo()
: ReadPARM
- get_parm_natoms()
: ReadPARM
- get_parm_nbonds()
: ReadPARM
- gItem
: graphics_list
- got_wavefunction
: gamessdata
- graphics
: stl_t, handle_t, msms_t, grasp_t
- guess
: gamessdata, molfile_qm_sysinfo_t
- h -
- i -
- j -
- k -
- l -
- m -
- n -
- name
: molfile_atom_t
- nangles
: gamessdata
- Nat3
: parm
- Natcap
: parm
- Natom
: parm
- natoms
: xbgfdata, vtf_data, pqrdata, parmdata, cdfdata, mol2data, mdfdata, jshandle, gmxdata, md_ts, md_header, trx_hdr, dcdhandle, bgfdata, pdbdata
- Natyp
: parm
- Nbona
: parm
- nbonds
: xbgfdata, vtf_data, psfdata, pdbdata, parmdata, mol2data, gamessdata, bgfdata
- Nbonds
: parm
- Nbonh
: parm
- Nbper
: parm
- ncart
: molfile_qm_metadata_t
- ncid
: cdfdata
- nclx
: pbeq_t
- ncly
: pbeq_t
- nclz
: pbeq_t
- nconect
: pdbdata
- ndata
: phi_t, pbeq_t, grd_t
- ndfunc
: gamessdata, molfile_qm_sysinfo_t
- ndiheds
: gamessdata
- Ndper
: parm
- next
: graphics_list, hash_node_t
- next_indexed
: vtf_data
- nffunc
: gamessdata, molfile_qm_sysinfo_t
- nfixed
: dcdhandle
- nframes
: jshandle
- ngauss
: gamessdata, molfile_qm_sysinfo_t
- Ngper
: parm
- Nhparm
: parm
- nimag
: gamessdata, molfile_qm_metadata_t
- nimag_modes
: gamessdata
- nimprops
: gamessdata
- nintcoords
: gamessdata, molfile_qm_metadata_t
- nlabel
: spider_t
- nmols
: mdfdata
- Nmxrs
: parm
- Nnb
: parm
- normal_modes
: gamessdata
- normalmodes
: molfile_qm_hessian_t
- npa_charges
: molfile_qm_timestep_t
- Nparm
: parm
- npfunc
: gamessdata, molfile_qm_sysinfo_t
- Nphb
: parm
- Nphia
: parm
- Nphih
: parm
- nproc
: gamessdata, molfile_qm_sysinfo_t
- Nptra
: parm
- nre
: trx_hdr
- Nres
: parm
- nrow
: spider_t
- nsam
: spider_t
- nsavc
: dcdhandle
- nsets
: uhbd_t, spider_t, situs_t, plt_t, phi_t, pbeq_t, gridmap_t, grd_t, fs4_t, edm_t, dx_t, dsn6_t, dcdhandle, cube_t, ccp4_t, brix_t, biomocca_t, avsfield_t
- nslice
: spider_t
- Nspm
: parm
- Nspsol
: parm
- nstack
: spider_t
- Ntheta
: parm
- Ntheth
: parm
- Nttyp
: parm
- Ntype2d
: parm
- Ntypes
: parm
- nuc_charge
: molfile_qm_sysinfo_t
- num_basis_funcs
: gamessdata, molfile_qm_metadata_t
- num_electrons
: gamessdata, molfile_qm_sysinfo_t
- num_gauss_basis_funcs
: gamessdata, molfile_qm_sysinfo_t
- num_gridpoints
: gamessdata
- num_orbitals_A
: gamessdata, molfile_qm_sysinfo_t
- num_orbitals_B
: gamessdata, molfile_qm_sysinfo_t
- num_scfenergies
: gamessdata
- num_shells
: gamessdata, molfile_qm_metadata_t
- num_traj_points
: gamessdata, molfile_qm_metadata_t
- Numang
: parm
- numatoms
: xyzdata, xsf_t, vasp_plugindata_t, tinkerdata, rstdata, psfdata, namdbinhandle, moldendata, mmcifdata, lammpsdata, gamessdata, dlpolydata, cube_t, crddata, cpmddata, cordata, cardata, binposhandle
- Numbnd
: parm
- Numextra
: parm
- numsteps
: xsf_t
- numvolmeta
: xsf_t
- nvert
: GRASSP
- nvolsets
: xsf_t, vasp_plugindata_t
- o -
- p -
- r -
- s -
- s
: fs4_t
- scale
: uhbd_t, spider_t, fs4_t
- scaled_data
: lammpsdata
- scfenergies
: gamessdata, molfile_qm_timestep_t
- scftyp
: gamessdata, molfile_qm_sysinfo_t
- scftyp_string
: gamessdata, molfile_qm_sysinfo_t
- segid
: molfile_atom_t
- setsread
: dcdhandle
- shell_primitives
: gamessdata, molfile_qm_orbital_t
- sig
: spider_t
- size
: hash_t, molfile_graphics_t
- skip
: datasource_t
- Solty
: parm
- spatial_id
: amberdata
- spatialdim
: amberdata
- spatialdimid
: amberdata
- step
: gmxdata, md_ts, trx_hdr
- step_id
: mmtkdata
- step_numberdim
: mmtkdata
- step_numberdimid
: mmtkdata
- stride
: datasource_t
- style
: molfile_graphics_t
- swap
: plt_t, pbeq_t, grid_t, grd_t, fs4_t, ccp4_t
- sym_size
: trx_hdr
- system_center
: gamessdata
- system_dimensions
: gamessdata
- t -
- t
: trx_hdr
- temporary
: gamessdata
- Teq
: parm
- theta
: spider_t
- time
: md_ts
- time_id
: amberdata, mmtkdata
- timeval
: md_header
- title
: parm, amberdata, md_header, trx_hdr, molfile_metadata_t
- titleline
: vasp_plugindata_t
- Tk
: parm
- to
: xbgfdata, vtf_data, psfdata, pdbdata, parmdata, mol2data, mdfdata, bgfdata
- top_size
: trx_hdr
- totalcharge
: gamessdata, molfile_qm_sysinfo_t
- trajectory
: moldendata
- trajectorytype
: mmtkdata
- TreeJoin
: parm
- trx
: md_file
- tsdelta
: jshandle
- type
: cdfdata, gamess_temp, molfile_graphics_t, molfile_atom_t
- u -
- v -
- v_size
: trx_hdr
- velocities
: molfile_timestep_t
- velocities_id
: amberdata
- version
: parm, trx_hdr, gamessdata
- version_string
: gamessdata, molfile_qm_sysinfo_t
- vfd
: msms_t
- vir_size
: trx_hdr
- vol
: xsf_t, vasp_plugindata_t, uhbd_t, spider_t, situs_t, plt_t, phi_t, pbeq_t, gridmap_t, grid_t, grd_t, gamessdata, fs4_t, edm_t, dx_t, dsn6_t, cube_t, ccp4_t, brix_t, biomocca_t, avsfield_t
- w -
- x -
- y -
- z -
- ~ -
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