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VMD Plugins (current) Compound Members
a | b | c | d | e | f | g | h | i | j | k | l | m | n | o | p | q | r | s | t | u | v | w | x | y | z | ~
Here is a list of all class members with links to the class documentation for each member:- a -
- A
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
- accession
: molfile_metadata_t
- add_cylinder
: import_graphics_cb_t
- add_line
: import_graphics_cb_t
- add_point
: import_graphics_cb_t
- add_sphere
: import_graphics_cb_t
- add_text
: import_graphics_cb_t
- add_triangle
: import_graphics_cb_t
- add_trinorm
: import_graphics_cb_t
- alpha
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
- altloc
: molfile_atom_t
- amber
: cdfdata
- angle
: hoomd_data_t
- angle_force_const
: qmdata_t
- AngleAt1
: parm
- AngleAt2
: parm
- AngleAt3
: parm
- AngleHAt1
: parm
- AngleHAt2
: parm
- AngleHAt3
: parm
- AngleHNum
: parm
- AngleNum
: parm
- angles
: qmdata_t, psfdata, jshandle, gaussiandata
- angletype
: hoomd_data_t
- angletypename
: hoomd_data_t
- angular_momentum
: qmdata_t, gaussiandata, molfile_qm_basis_t
- animsteps
: xsf_t
- application
: amberdata
- atom_numberdim
: mmtkdata
- atom_numberdimid
: mmtkdata
- atomdim
: amberdata
- atomdimid
: amberdata
- atomic_number
: molfile_qm_basis_t
- atomicnum
: qm_atom_t, basis_atom_t
- atomicnum_per_basisatom
: qmdata_t, gaussiandata
- atomicnumber
: molfile_atom_t
- atomlist
: xyzdata, xbgfdata, vasp_plugindata_t, tinkerdata, pqrdata, pdbdata, mol2data, mmcifdata, jshandle, hoomd_data_t, cardata, bgfdata, abinit_plugindata_t
- atomname
: md_atom
- AtomNames
: parm
- atomnum
: md_atom
- AtomRes
: parm
- atoms
: vtf_data, qmdata_t
- AtomSym
: parm
- AtomTree
: parm
- atomtypes
: lammpsdata
- av
: spider_t
- avg_bytes_per_timestep
: molfile_qm_timestep_metadata, molfile_timestep_metadata
- b -
- B
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
- babel_i
: pdbdata
- babel_num
: pdbdata
- bantot
: abinit_binary_header_t
- basis
: qmdata_t, gaussiandata, molfile_qm_t, molfile_qm_basis_t
- basis_set
: qmdata_t, gaussiandata
- basis_string
: qmdata_t, gaussiandata, molfile_qm_sysinfo_t
- beta
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
- bfactor
: molfile_atom_t
- bintype
: abinit_binary_header_t
- bond_force_const
: qmdata_t
- BondAt1
: parm
- BondAt2
: parm
- bondfrom
: jshandle
- BondHAt1
: parm
- BondHAt2
: parm
- BondHNum
: parm
- BondNum
: parm
- bondorder
: xbgfdata, mol2data, bgfdata
- bondorders
: jshandle
- bonds
: qmdata_t, gaussiandata
- bondto
: jshandle
- bondtype
: hoomd_data_t
- bondtypename
: hoomd_data_t
- Boundary
: parm
- Box
: parm
- box
: xsf_t, md_ts, cube_t
- box_size
: trx_hdr
- box_size_id
: mmtkdata
- box_size_lengthdim
: mmtkdata
- box_size_lengthdimid
: mmtkdata
- bucket
: inthash_t, hash_t
- buffer
: hoomd_data_t
- byteswap
: spider_t
- c -
- C
: xsf_box, vtf_data, md_box, cube_box, molfile_timestep_t
- cartesian
: qm_wavefunction_t
- carthessian
: qmdata_t, gaussiandata, molfile_qm_hessian_t
- cell
: xsf_box, vasp_plugindata_t
- cell_angles_id
: amberdata
- cell_angles_scalefactor
: amberdata
- cell_angles_units
: amberdata
- cell_angular_id
: amberdata
- cell_lengths_id
: amberdata
- cell_lengths_scalefactor
: amberdata
- cell_lengths_units
: amberdata
- cell_spatial_id
: amberdata
- cellwarnflag
: dlpolydata
- chain
: molfile_atom_t
- charge
: molfile_atom_t
- charge_types
: molfile_qm_timestep_t
- Charges
: parm
- charges
: molfile_qm_timestep_t
- charmm
: dcdhandle
- charmmcheq
: psfdata
- charmmcmap
: psfdata
- charmmdrude
: psfdata
- charmmext
: psfdata
- charmmfmt
: psfdata
- chi
: GRASSP
- citype
: qmdata_t
- clo
: GRASSP
- close_file_read
: molfile_plugin_t, import_graphics_plugin_t
- close_file_write
: molfile_plugin_t
- close_parm_file()
: ReadPARM
- cmd
: GRASSP
- Cn1
: parm
- Cn2
: parm
- Cno
: parm
- codvsn
: abinit_binary_header_t
- colors
: GRASSP
- comment
: mmtkdata
- configuration_id
: mmtkdata
- cons_fputs
: molfile_plugin_t
- contraction_coeff
: prim_t
- conventions
: cdfdata
- conventionversion
: amberdata
- converged
: gaussiandata
- coord
: xsf_t, cube_t
- coord_data
: lammpsdata
- coord_location
: cardata
- coordinates_id
: amberdata
- coordinates_scalefactor
: amberdata
- coordinates_units
: amberdata
- coords
: vtf_data, molfile_timestep_t
- coords_read
: xbgfdata, mol2data, bgfdata
- coordsonly
: moldendata_t
- count
: rstdata, molfile_qm_timestep_metadata, molfile_timestep_metadata
- counter
: hoomd_data_t
- cplex
: abinit_binary_header_t
- crdpos
: cube_t
- cterms
: psfdata, jshandle
- curframe
: cdfdata
- current_file
: pdbdata
- currtag
: hoomd_data_t
- Cutcap
: parm
- d -
- e -
- f -
- f
: md_file, fs4_t
- f_size
: trx_hdr
- fd
: xsf_t, uhbd_t, stl_t, spider_t, situs_t, handle_t, pqrdata, plt_t, phi_t, pdbdata, pbeq_t, parmdata, namdbinhandle, pmesh_t, gridmap_t, jshandle, grid_t, grd_t, grasp_t, fs4_t, edm_t, dx_t, dsn6_t, dcdhandle, cube_t, ccp4_t, brix_t, biomocca_t, binposhandle, pdbdata
- fermie
: abinit_binary_header_t
- ffd
: msms_t
- fform
: abinit_binary_header_t
- field
: lammpsdata
- file
: xyzdata, xbgfdata, vtf_data, vasp_plugindata_t, tinkerdata, rstdata, qmdata_t, mol2data, mmcifdata, mdfdata, lammpsdata, gaussiandata, dlpolydata, crddata, cpmddata, cordata, cardata, bgfdata, abinit_plugindata_t
- file_name
: xyzdata, xsf_t, tinkerdata, lammpsdata, gaussiandata, cube_t, cpmddata
- filename
: vasp_plugindata_t, hoomd_data_t, datasource_t, abinit_plugindata_t
- filename_extension
: molfile_plugin_t, import_graphics_plugin_t
- filepos_array
: qmdata_t
- filepos_atoms
: moldendata_t
- filepos_geomxyz
: moldendata_t
- filepos_gto
: moldendata_t
- filepos_mo
: moldendata_t
- filetype
: datasource_t, abinit_plugindata_t
- first
: dcdhandle
- first_frame
: pdbdata
- fixedcoords
: dcdhandle
- flag
: GRASSP
- fmax
: spider_t
- fmin
: spider_t
- fmt
: md_file
- format_specific_data
: qmdata_t
- fp
: psfdata, lammpsdata, hoomd_data_t
- framedim
: amberdata
- framedimid
: amberdata
- freeind
: dcdhandle
- from
: xbgfdata, pdbdata, vtf_data, psfdata, pdbdata, parmdata, mol2data, mdfdata, hoomd_data_t, bgfdata
- g -
- gamma
: xsf_box, vtf_data, spider_t, md_box, cube_box, molfile_timestep_t
- gbasis
: qmdata_t, gaussiandata
- geometry
: qmdata_t, gaussiandata, molfile_qm_sysinfo_t
- get()
: ReadPARM
- get_hydrogen_bond()
: ReadPARM
- get_parm_atom()
: ReadPARM
- get_parm_bond()
: ReadPARM
- get_parm_boxInfo()
: ReadPARM
- get_parm_natoms()
: ReadPARM
- get_parm_nbonds()
: ReadPARM
- gItem
: graphics_list
- gradient
: qm_timestep_t, molfile_qm_timestep_t
- graphics
: stl_t, handle_t, msms_t, pmesh_t, grasp_t
- guess
: qmdata_t, gaussiandata
- h -
- i -
- Iac
: parm
- iangle
: spider_t
- Iblo
: parm
- idmap
: lammpsdata
- idtag
: qm_wavefunction_t
- idxmap
: pdbdata
- IfBox
: parm
- IfCap
: parm
- iform
: spider_t
- Ifpert
: parm
- imag_modes
: qmdata_t, molfile_qm_hessian_t
- imagecounts
: hoomd_data_t
- imami
: spider_t
- improper
: hoomd_data_t
- improper_force_const
: qmdata_t
- impropers
: qmdata_t, psfdata, jshandle, gaussiandata
- impropertype
: hoomd_data_t
- impropertypename
: hoomd_data_t
- info
: qm_wavefunction_t, molfile_qm_wavefunction_t
- initatoms
: gaussiandata
- initcell
: gaussiandata
- insertion
: molfile_atom_t
- intensities
: qmdata_t, gaussiandata, molfile_qm_hessian_t
- internal_coordinates
: qmdata_t, gaussiandata
- inthessian
: qmdata_t, gaussiandata, molfile_qm_hessian_t
- intxc
: abinit_binary_header_t
- inuse
: spider_t
- invmat
: xsf_t
- iofoext
: cordata
- iov_base
: fio_iovec
- iov_len
: fio_iovec
- Ipatm
: parm
- Ipres
: parm
- Iptres
: parm
- ir_size
: trx_hdr
- isBinary
: dx_t
- istart
: dcdhandle
- istwfk
: abinit_binary_header_t
- ititl
: parm
- ixc
: abinit_binary_header_t
- j -
- k -
- l -
- m -
- n -
- namdfmt
: psfdata
- name
: basis_atom_t, molfile_atom_t
- nangles
: qmdata_t, gaussiandata
- Nat3
: parm
- Natcap
: parm
- Natom
: parm
- natom
: abinit_plugindata_t, abinit_binary_header_t
- natoms
: xbgfdata, vtf_data, pqrdata, parmdata, cdfdata, mol2data, mdfdata, jshandle, gmxdata, md_ts, md_header, trx_hdr, dcdhandle, bgfdata, pdbdata
- Natyp
: parm
- naxis
: qmdata_t
- nband
: abinit_binary_header_t
- Nbona
: parm
- Nbonds
: parm
- nbonds
: xbgfdata, vtf_data, qmdata_t, psfdata, pdbdata, parmdata, mol2data, jshandle, gaussiandata, bgfdata
- Nbonh
: parm
- Nbper
: parm
- ncart
: molfile_qm_metadata_t
- ncid
: cdfdata
- nclx
: pbeq_t
- ncly
: pbeq_t
- nclz
: pbeq_t
- nconect
: pdbdata
- ndata
: phi_t, pbeq_t, grd_t
- ndiheds
: qmdata_t, gaussiandata
- Ndper
: parm
- next
: graphics_list, inthash_node_t, hash_node_t
- nfixed
: dcdhandle
- nframes
: jshandle
- ngfft
: abinit_binary_header_t
- Ngper
: parm
- Nhparm
: parm
- nimag
: qmdata_t, gaussiandata, molfile_qm_metadata_t
- nimag_modes
: gaussiandata
- nimprops
: qmdata_t, gaussiandata
- nintcoords
: qmdata_t, gaussiandata, molfile_qm_metadata_t
- nkpt
: abinit_binary_header_t
- nlabel
: spider_t
- nmols
: mdfdata
- Nmxrs
: parm
- Nnb
: parm
- normal_modes
: qmdata_t, gaussiandata
- normalmodes
: molfile_qm_hessian_t
- npa_charges
: qm_timestep_t
- Nparm
: parm
- Nphb
: parm
- Nphia
: parm
- Nphih
: parm
- nproc
: qmdata_t, gaussiandata, molfile_qm_sysinfo_t
- npsp
: abinit_binary_header_t
- Nptra
: parm
- npwarr
: abinit_binary_header_t
- nre
: trx_hdr
- Nres
: parm
- nrow
: spider_t
- nsam
: spider_t
- nsavc
: dcdhandle
- nsets
: uhbd_t, spider_t, situs_t, plt_t, phi_t, pbeq_t, gridmap_t, grd_t, fs4_t, edm_t, dx_t, dsn6_t, dcdhandle, cube_t, ccp4_t, brix_t, biomocca_t, avsfield_t
- nslice
: spider_t
- nspden
: abinit_binary_header_t
- nspinor
: abinit_binary_header_t
- Nspm
: parm
- nsppol
: abinit_binary_header_t
- Nspsol
: parm
- nstack
: spider_t
- nstep
: lammpsdata
- nsym
: abinit_binary_header_t
- Ntheta
: parm
- Ntheth
: parm
- Nttyp
: parm
- ntypat
: abinit_binary_header_t
- Ntype2d
: parm
- Ntypes
: parm
- nuc_charge
: molfile_qm_sysinfo_t
- num_basis_atoms
: qmdata_t, gaussiandata, molfile_qm_metadata_t
- num_basis_funcs
: qmdata_t, gaussiandata, molfile_qm_metadata_t
- num_charge_sets
: molfile_qm_timestep_metadata
- num_coeffs
: qm_wavefunction_t
- num_electrons
: qmdata_t, gaussiandata, molfile_qm_sysinfo_t
- num_frames
: qmdata_t, gaussiandata
- num_frames_read
: qmdata_t, gaussiandata
- num_frames_sent
: qmdata_t, gaussiandata
- num_occupied_A
: qmdata_t, molfile_qm_sysinfo_t
- num_occupied_B
: qmdata_t, molfile_qm_sysinfo_t
- num_orbitals
: gaussiandata, qm_timestep_t, qm_wavefunction_t
- num_orbitals_per_wavef
: molfile_qm_timestep_metadata
- num_prim_per_shell
: qmdata_t, gaussiandata, molfile_qm_basis_t
- num_scfiter
: qm_timestep_t, molfile_qm_timestep_metadata
- num_shells
: qmdata_t, gaussiandata, molfile_qm_metadata_t
- num_shells_per_atom
: qmdata_t, gaussiandata, molfile_qm_basis_t
- num_wavef
: molfile_qm_timestep_metadata
- Numang
: parm
- numangles
: psfdata, jshandle, hoomd_data_t
- numangletypes
: hoomd_data_t
- numatoms
: xyzdata, xsf_t, vasp_plugindata_t, tinkerdata, rstdata, qmdata_t, psfdata, namdbinhandle, mmcifdata, lammpsdata, hoomd_data_t, gaussiandata, dlpolydata, cube_t, crddata, cpmddata, cordata, cardata, binposhandle
- Numbnd
: parm
- numbonds
: hoomd_data_t
- numbondtypes
: hoomd_data_t
- numcterms
: psfdata, jshandle
- numdihedrals
: psfdata, jshandle, hoomd_data_t
- numdihedraltypes
: hoomd_data_t
- numdims
: hoomd_data_t
- Numextra
: parm
- numfields
: lammpsdata
- numframe
: hoomd_data_t
- numimpropers
: psfdata, jshandle, hoomd_data_t
- numimpropertypes
: hoomd_data_t
- numprims
: shell_t
- numshells
: basis_atom_t
- numsteps
: xsf_t
- numtypes
: hoomd_data_t
- numvolmeta
: xsf_t
- numwave
: qm_timestep_t
- nvert
: GRASSP
- nvolsets
: xsf_t, vasp_plugindata_t, abinit_plugindata_t
- o -
- p -
- q -
- r -
- s -
- s
: fs4_t
- scale
: uhbd_t, spider_t, fs4_t
- scfenergies
: qm_timestep_t, molfile_qm_timestep_t
- scftyp
: gaussiandata
- scftyp_string
: gaussiandata
- scftype
: qmdata_t, molfile_qm_sysinfo_t
- segid
: molfile_atom_t
- setsread
: dcdhandle
- shell
: basis_atom_t
- shell_symmetry
: gaussiandata
- shell_types
: qmdata_t, molfile_qm_basis_t
- sig
: spider_t
- size
: inthash_t, hash_t, molfile_graphics_t
- skip
: datasource_t
- so_psp
: abinit_binary_header_t
- Solty
: parm
- spatial_id
: amberdata
- spatialdim
: amberdata
- spatialdimid
: amberdata
- spin
: qm_wavefunction_t, molfile_qm_wavefunction_t
- status
: qmdata_t, molfile_qm_sysinfo_t
- step
: gmxdata, md_ts, trx_hdr
- step_id
: mmtkdata
- step_numberdim
: mmtkdata
- step_numberdimid
: mmtkdata
- stmbias
: abinit_binary_header_t
- stride
: datasource_t
- style
: molfile_graphics_t
- swap
: plt_t, pbeq_t, grid_t, grd_t, fs4_t, ccp4_t
- sym_size
: trx_hdr
- symafm
: abinit_binary_header_t
- symmetry
: shell_t
- symrel
: abinit_binary_header_t
- t -
- t
: trx_hdr
- Teq
: parm
- theta
: spider_t
- time
: md_ts
- time_id
: amberdata, mmtkdata
- timestep
: vtf_data
- timestep_mode
: vtf_data
- timeval
: md_header
- title
: parm, amberdata, md_header, trx_hdr, abinit_binary_header_t, molfile_metadata_t
- titleline
: vasp_plugindata_t
- Tk
: parm
- tnons
: abinit_binary_header_t
- to
: xbgfdata, vtf_data, psfdata, pdbdata, parmdata, mol2data, mdfdata, hoomd_data_t, bgfdata
- top_size
: trx_hdr
- totalcharge
: qmdata_t, gaussiandata, molfile_qm_sysinfo_t
- tphysel
: abinit_binary_header_t
- trajectory_done
: qmdata_t
- trajectorytype
: mmtkdata
- TreeJoin
: parm
- trx
: md_file
- ts
: hoomd_data_t
- ts_crd_padsz
: jshandle
- ts_crd_sz
: jshandle
- ts_file_offset
: jshandle
- ts_ucell_padsz
: jshandle
- ts_ucell_sz
: jshandle
- tsdelta
: jshandle
- tsmear
: abinit_binary_header_t
- typat
: abinit_plugindata_t, abinit_binary_header_t
- type
: shell_t, cdfdata, qm_wavefunction_t, qm_atom_t, molfile_graphics_t, molfile_qm_wavefunction_t, molfile_atom_t
- u -
- v -
- v_size
: trx_hdr
- velocities
: molfile_timestep_t
- velocities_id
: amberdata
- version
: vasp_plugindata_t, parm, trx_hdr, gaussiandata, gmsdata
- version_string
: qmdata_t, gaussiandata, molfile_qm_sysinfo_t
- vfd
: msms_t
- vir_size
: trx_hdr
- vol
: xsf_t, vasp_plugindata_t, uhbd_t, spider_t, situs_t, plt_t, phi_t, pbeq_t, gridmap_t, grid_t, grd_t, fs4_t, edm_t, dx_t, dsn6_t, cube_t, ccp4_t, brix_t, biomocca_t, avsfield_t, abinit_plugindata_t
- w -
- x -
- y -
- z -
- ~ -
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