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jshandle Struct Reference

List of all members.

Public Attributes

int verbose
fio_fd fd
long natoms
int parsed_structure
char * path
int directio_pgsize_queried
int directio_enabled
fio_fd directio_fd
int directio_block_size
void * directio_ucell_ptr
void * directio_ucell_blkbuf
fio_size_t ts_file_offset
fio_size_t ts_crd_sz
fio_size_t ts_crd_padsz
fio_size_t ts_ucell_sz
fio_size_t ts_ucell_padsz
int optflags
molfile_atom_tatomlist
molfile_metadata_tmeta
int nbonds
int * bondfrom
int * bondto
float * bondorders
int numangles
int * angles
int numdihedrals
int * dihedrals
int numimpropers
int * impropers
int numcterms
int * cterms
int nframes
double tsdelta
int reverseendian
int with_unitcell
unsigned char blockpad [MOLFILE_DIRECTIO_MAX_BLOCK_SIZE]

Member Data Documentation

int * jshandle::angles
 

Definition at line 210 of file jsplugin.c.

Referenced by close_js_read, close_js_write, read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

molfile_atom_t* jshandle::atomlist
 

Definition at line 200 of file jsplugin.c.

unsigned char jshandle::blockpad[MOLFILE_DIRECTIO_MAX_BLOCK_SIZE]
 

Definition at line 223 of file jsplugin.c.

Referenced by write_js_timestep.

int* jshandle::bondfrom
 

Definition at line 205 of file jsplugin.c.

Referenced by close_js_read, close_js_write, read_js_bonds, read_js_structure, write_js_bonds, and write_js_structure.

float* jshandle::bondorders
 

Definition at line 207 of file jsplugin.c.

Referenced by close_js_read, close_js_write, read_js_bonds, read_js_structure, write_js_bonds, and write_js_structure.

int* jshandle::bondto
 

Definition at line 206 of file jsplugin.c.

Referenced by close_js_read, close_js_write, read_js_bonds, read_js_structure, write_js_bonds, and write_js_structure.

int * jshandle::cterms
 

Definition at line 213 of file jsplugin.c.

Referenced by close_js_read, close_js_write, read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

int * jshandle::dihedrals
 

Definition at line 211 of file jsplugin.c.

Referenced by close_js_read, close_js_write, read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

int jshandle::directio_block_size
 

Definition at line 187 of file jsplugin.c.

Referenced by js_blockio_check_and_set, js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_structure, read_js_timestep, read_js_timestep_pagealign_size, write_js_structure, and write_js_timestep.

int jshandle::directio_enabled
 

Definition at line 185 of file jsplugin.c.

Referenced by close_js_read, js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_structure, and read_js_timestep.

fio_fd jshandle::directio_fd
 

Definition at line 186 of file jsplugin.c.

Referenced by close_js_read, js_calc_timestep_blocking_info, open_js_read, read_js_structure, read_js_timestep, and read_js_timestep_index_offsets.

int jshandle::directio_pgsize_queried
 

Definition at line 184 of file jsplugin.c.

Referenced by open_js_read, read_js_structure, and read_js_timestep_pagealign_size.

void* jshandle::directio_ucell_blkbuf
 

Definition at line 189 of file jsplugin.c.

Referenced by js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_timestep, and write_js_timestep.

void* jshandle::directio_ucell_ptr
 

Definition at line 188 of file jsplugin.c.

Referenced by close_js_read, close_js_write, js_calc_timestep_blocking_info, open_js_read, and open_js_write.

fio_fd jshandle::fd
 

Definition at line 174 of file jsplugin.c.

Referenced by close_js_read, close_js_write, js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_structure, read_js_timestep, write_js_structure, and write_js_timestep.

int * jshandle::impropers
 

Definition at line 212 of file jsplugin.c.

Referenced by close_js_read, close_js_write, read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

molfile_metadata_t* jshandle::meta
 

Definition at line 201 of file jsplugin.c.

long jshandle::natoms
 

Definition at line 175 of file jsplugin.c.

Referenced by js_blockio_check_and_set, js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_structure, read_js_timestep, and write_js_structure.

int jshandle::nbonds
 

Definition at line 204 of file jsplugin.c.

Referenced by read_js_bonds, read_js_structure, write_js_bonds, and write_js_structure.

int jshandle::nframes
 

Definition at line 217 of file jsplugin.c.

Referenced by close_js_write, open_js_read, open_js_write, and write_js_timestep.

int jshandle::numangles
 

Definition at line 210 of file jsplugin.c.

Referenced by read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

int jshandle::numcterms
 

Definition at line 213 of file jsplugin.c.

Referenced by read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

int jshandle::numdihedrals
 

Definition at line 211 of file jsplugin.c.

Referenced by read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

int jshandle::numimpropers
 

Definition at line 212 of file jsplugin.c.

Referenced by read_js_angles, read_js_structure, write_js_angles, and write_js_structure.

int jshandle::optflags
 

Definition at line 199 of file jsplugin.c.

Referenced by js_blockio_check_and_set, open_js_read, read_js_bonds, read_js_structure, read_js_timestep_pagealign_size, write_js_angles, write_js_bonds, write_js_structure, and write_js_timestep.

int jshandle::parsed_structure
 

Definition at line 180 of file jsplugin.c.

Referenced by open_js_read, open_js_write, read_js_structure, read_js_timestep, and read_js_timestep_index_offsets.

char* jshandle::path
 

Definition at line 181 of file jsplugin.c.

Referenced by close_js_read, open_js_read, and read_js_structure.

int jshandle::reverseendian
 

Definition at line 219 of file jsplugin.c.

Referenced by open_js_read, read_js_structure, and read_js_timestep.

fio_size_t jshandle::ts_crd_padsz
 

Definition at line 194 of file jsplugin.c.

Referenced by js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_timestep, read_js_timestep_index_offsets, and write_js_timestep.

fio_size_t jshandle::ts_crd_sz
 

Definition at line 193 of file jsplugin.c.

Referenced by js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_timestep, and write_js_timestep.

fio_size_t jshandle::ts_file_offset
 

Definition at line 192 of file jsplugin.c.

Referenced by js_calc_timestep_blocking_info, open_js_read, open_js_write, and read_js_timestep_index_offsets.

fio_size_t jshandle::ts_ucell_padsz
 

Definition at line 196 of file jsplugin.c.

Referenced by js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_timestep, read_js_timestep_index_offsets, and write_js_timestep.

fio_size_t jshandle::ts_ucell_sz
 

Definition at line 195 of file jsplugin.c.

Referenced by js_calc_timestep_blocking_info, open_js_read, open_js_write, read_js_timestep, and write_js_timestep.

double jshandle::tsdelta
 

Definition at line 218 of file jsplugin.c.

int jshandle::verbose
 

Definition at line 173 of file jsplugin.c.

Referenced by js_calc_timestep_blocking_info, open_js_read, read_js_structure, and write_js_bonds.

int jshandle::with_unitcell
 

Definition at line 220 of file jsplugin.c.

Referenced by open_js_write.


The documentation for this struct was generated from the following file:
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