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BaseMolecule Member List

This is the complete list of members for BaseMolecule, including all inherited members.

add_atom(char *name, char *type, int atomicnumber, char *resname, int resid, const char *chainid, const char *segname, char *insertion=(char *)"", const char *altloc="")	BaseMolecule
add_bond(int, int, float, int=ATOMNORMAL)	BaseMolecule
add_bond_dupcheck(int, int, float)	BaseMolecule
add_volume_data(const char *name, const float *o, const float *xa, const float *ya, const float *za, int x, int y, int z, float *voldata)	BaseMolecule
altlocNames	BaseMolecule
analyze(void)	BaseMolecule
atom(int n)	BaseMolecule	[inline]
atom_fragment(int)	BaseMolecule
atom_residue(int)	BaseMolecule
atomNames	BaseMolecule
atomTypes	BaseMolecule
BaseMolecule(int)	BaseMolecule
beta()	BaseMolecule	[inline]
bondorders()	BaseMolecule	[inline]
chainNames	BaseMolecule
charge()	BaseMolecule	[inline]
clear_bonds(void)	BaseMolecule
compute_volume_gradient(VolumetricData *)	BaseMolecule
count_bonds(void)	BaseMolecule
default_beta(void)	BaseMolecule	[inline]
default_charge(char *)	BaseMolecule
default_mass(char *)	BaseMolecule
default_occup(void)	BaseMolecule	[inline]
default_radius(char *)	BaseMolecule
extra	BaseMolecule
find_atom_in_residue(int atomnameindex, int residue)	BaseMolecule	[inline]
find_atom_in_residue(const char *atomname, int residue)	BaseMolecule
find_bonds_from_timestep()	BaseMolecule	[inline]
find_unique_bonds_from_timestep()	BaseMolecule	[inline]
fragList	BaseMolecule
fragment(int)	BaseMolecule
get_volume_data(int)	BaseMolecule
getbondorder(int atom, int bond)	BaseMolecule
has_structure() const	BaseMolecule	[inline]
id(void) const	BaseMolecule	[inline]
init_atoms(int n)	BaseMolecule
mass()	BaseMolecule	[inline]
moleculename	BaseMolecule	[protected]
molname() const	BaseMolecule	[inline]
nAtoms	BaseMolecule
need_find_bonds	BaseMolecule	[protected]
nfragCyclic	BaseMolecule
nfragList	BaseMolecule
nFragments	BaseMolecule
nNucleicFragments	BaseMolecule
nProteinFragments	BaseMolecule
nResidues	BaseMolecule
nSegments	BaseMolecule
num_volume_data()	BaseMolecule
nWaters	BaseMolecule
occupancy()	BaseMolecule	[inline]
pfragCyclic	BaseMolecule
pfragList	BaseMolecule
radius()	BaseMolecule	[inline]
residue(int)	BaseMolecule
residueList	BaseMolecule
resNames	BaseMolecule
segNames	BaseMolecule
setbondorder(int atom, int bond, float order)	BaseMolecule
volumeList	BaseMolecule	[protected]
~BaseMolecule(void)	BaseMolecule	[virtual]

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