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CmdMol.h File Reference

#include <string.h>
#include "Command.h"
#include "VMDApp.h"

Go to the source code of this file.

Compounds
class	CmdMolActive
	make the Nth molecule 'active' or 'inactive'. More...
class	CmdMolAddRep
	add a new representation to the specified molecule. More...
class	CmdMolBondsRecalc
	re-analyze structure after atom names, bonds, etc have been modified. More...
class	CmdMolCancel
	Cancel the loading/saving of a coordinate file. More...
class	CmdMolChangeRep
	change the representation to the current defaults. More...
class	CmdMolChangeRepItem
	change 1 representation characteristic for the specified mol. More...
class	CmdMolColor
	set the current atom coloring method in moleculeList. More...
class	CmdMolDelete
	delete the Nth molecule in the molecule List. More...
class	CmdMolDeleteRep
	delete a representation for the specified molecule. More...
class	CmdMolDrawFrames
	Set the range of frames to draw for this rep. More...
class	CmdMolFix
	make the Nth molecule 'fixed' or 'free'. More...
class	CmdMolLoad
	Notification that a molecule has been created. More...
class	CmdMolMaterial
	set the current atom material method in moleculeList. More...
class	CmdMolNew
	Create a new molecule. More...
class	CmdMolNumPeriodic
	Set the number of periodic images displayed for the selected representation. More...
class	CmdMolOn
	make the Nth molecule 'on' or 'off'. More...
class	CmdMolReanalyze
	re-analyze structure after atom names, bonds, etc have been modified. More...
class	CmdMolRename
	rename a molecule. More...
class	CmdMolRep
	set the current atom representation in moleculeList. More...
class	CmdMolRepColorUpdate
	Change the auto-update for the color of the specified rep. More...
class	CmdMolRepSelUpdate
	Change the auto-update for the selection of the specified rep. More...
class	CmdMolScaleMinmax
	Set the color scale min/max range for the selected representation. More...
class	CmdMolSelect
	set the current atom selection in moleculeList. More...
class	CmdMolShowInstances
	Set which instance images are displayed for the selected representation. More...
class	CmdMolShowPeriodic
	Set which periodic images are displayed for the selected representation. More...
class	CmdMolShowRep
	Set the "shown" state for the selected representation. More...
class	CmdMolSmoothRep
	Set the trajectory smoothing window size for the selected representation. More...
class	CmdMolSSRecalc
	recalculate secondary structure based on current coordinates. More...
class	CmdMolTop
	make the Nth molecule 'top'. More...
class	CmdMolVolume
	Add a new volumetric dataset to the selected molecule. More...

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