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Segmentation Class Reference

Top-level class that given an image will segement the image using watershed and then postprocess the segmentation using a space scale filter algorithm. More...

#include <Segmentation.h>

List of all members.

Public Methods
	Segmentation (const VolumetricData *map, bool cuda=true)
	Creates a segmentation object given a 3D float array and volumetric metadata. Optional argument to disable CUDA. More...
	Segmentation (float *data, molfile_volumetric_t *metatdata, bool cuda=true)
	Creates a segmentation object given a 3D float array and volumetric metadata. Optional argument to disable CUDA. More...
	Segmentation (unsigned short *data, molfile_volumetric_t *metatdata, bool cuda=true)
	Segmentation (unsigned char *data, molfile_volumetric_t *metatdata, bool cuda=true)
	~Segmentation ()
double	segment (int num_final_groups, float watershed_blur_sigma, float blur_initial_sigma, float blur_multiple, MERGE_POLICY policy, const bool verbose=true)
	Runs the segmentation algorithm until there are <= num_final_groups. More...
template<typename OUT_T> void	get_results (OUT_T *results)
	Copies the segmentation into the provided results array. Can be of type int, short, or (legacy) float. More...
unsigned long	get_num_groups ()
	Returns the number of groups in the segmentation. More...

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Detailed Description

Top-level class that given an image will segement the image using watershed and then postprocess the segmentation using a space scale filter algorithm.

Definition at line 36 of file Segmentation.h.

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Constructor & Destructor Documentation

Segmentation::Segmentation (  const VolumetricData *    map, bool    cuda = true )

Creates a segmentation object given a 3D float array and volumetric metadata. Optional argument to disable CUDA. Definition at line 50 of file Segmentation.C. References VolumetricData::data, PROFILE_POP_RANGE, PROFILE_PUSH_RANGE, VolumetricData::xsize, VolumetricData::ysize, and VolumetricData::zsize.

Segmentation::Segmentation (  float *    data, molfile_volumetric_t *    metatdata, bool    cuda = true )

Creates a segmentation object given a 3D float array and volumetric metadata. Optional argument to disable CUDA. Definition at line 105 of file Segmentation.C. References data, PROFILE_POP_RANGE, and PROFILE_PUSH_RANGE.

Segmentation::Segmentation (  unsigned short *    data, molfile_volumetric_t *    metatdata, bool    cuda = true )

Definition at line 119 of file Segmentation.C. References data, PROFILE_POP_RANGE, and PROFILE_PUSH_RANGE.

Segmentation::Segmentation (  unsigned char *    data, molfile_volumetric_t *    metatdata, bool    cuda = true )

Definition at line 132 of file Segmentation.C. References data, PROFILE_POP_RANGE, and PROFILE_PUSH_RANGE.

Segmentation::~Segmentation (    )

Definition at line 146 of file Segmentation.C. References NULL.

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Member Function Documentation

unsigned long Segmentation::get_num_groups (    )

Returns the number of groups in the segmentation. Definition at line 406 of file Segmentation.C. Referenced by segment_volume.

template<typename OUT_T> void Segmentation::get_results (  OUT_T *    results )

Copies the segmentation into the provided results array. Can be of type int, short, or (legacy) float. Definition at line 413 of file Segmentation.C. References PROFILE_POP_RANGE, and PROFILE_PUSH_RANGE. Referenced by segment_volume.

double Segmentation::segment (  int    num_final_groups, float    watershed_blur_sigma, float    blur_initial_sigma, float    blur_multiple, MERGE_POLICY    policy, const bool    verbose = true )

Runs the segmentation algorithm until there are <= num_final_groups. Definition at line 169 of file Segmentation.C. References MERGE_POLICY, PROFILE_POP_RANGE, PROFILE_PUSH_RANGE, wkf_timer_create, wkf_timer_destroy, wkf_timer_start, wkf_timer_stop, wkf_timer_time, and wkf_timerhandle. Referenced by segment_volume.

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The documentation for this class was generated from the following files:

• Segmentation.h
• Segmentation.C

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